CF509692

Overview
NameCF509692
Unique NameCF509692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF509692 vs. ExPASy Swiss-Prot
Match: NACA_YEAST (Nascent polypeptide-associated complex subunit alpha OS=Saccharomyces cerevisiae GN=EGD2 PE=1 SV=3)

HSP 1 Score: 58.5362 bits (140), Expect = 3.618e-11
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:  256 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQ 438
            KLG+K IPG+ RVT +K  N ++ I KP+VF+S     Y+VFGEAK+++ + +L   AA+Q
Sbjct:   26 KLGLKQIPGIIRVTFRKKDNQIYAIEKPEVFRS-AGGNYVVFGEAKVDNFTQKL--AAAQQ 83

HSP 2 Score: 29.261 bits (64), Expect = 3.618e-11
Identity = 19/58 (32.76%), Postives = 30/58 (51.72%), Query Frame = 3 
Query:  435 AVQGPSSYTGNVASKPESS---AMVQDDEE--VDETGVEPKDIELVMTQAGVPRSRAV 593
            A + P     ++ +  E S   A  +DDEE  VD   +   DIELV+ Q  V +++A+
Sbjct:   98 ATKSPEDIQADMQAAAEGSVNAAAEEDDEEGEVDAGDLNKDDIELVVQQTNVSKNQAI 155
[Close]
BLAST of CF509692 vs. ExPASy Swiss-Prot
Match: NACA_YEAS7 (Nascent polypeptide-associated complex subunit alpha OS=Saccharomyces cerevisiae (strain YJM789) GN=EGD2 PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 3.618e-11
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:  256 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQ 438
            KLG+K IPG+ RVT +K  N ++ I KP+VF+S     Y+VFGEAK+++ + +L   AA+Q
Sbjct:   26 KLGLKQIPGIIRVTFRKKDNQIYAIEKPEVFRS-AGGNYVVFGEAKVDNFTQKL--AAAQQ 83

HSP 2 Score: 29.261 bits (64), Expect = 3.618e-11
Identity = 19/58 (32.76%), Postives = 30/58 (51.72%), Query Frame = 3 
Query:  435 AVQGPSSYTGNVASKPESS---AMVQDDEE--VDETGVEPKDIELVMTQAGVPRSRAV 593
            A + P     ++ +  E S   A  +DDEE  VD   +   DIELV+ Q  V +++A+
Sbjct:   98 ATKSPEDIQADMQAAAEGSVNAAAEEDDEEGEVDAGDLNKDDIELVVQQTNVSKNQAI 155
The following BLAST results are available for this feature:
BLAST of CF509692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
NACA_YEAST3.618e-1147.54Nascent polypeptide-associated complex subunit alp... [more]
NACA_YEAS73.618e-1147.54Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-200 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509692 ID=CF509692; Name=CF509692; organism=Citrus sinensis; type=EST; length=593bp
GCTTCTCGTTCTCAAGTCTCAACACCCAGCCCAAAAAAAATGACTGCTCA
GTCTCAAGAAGAGCTCCTCGCTGCCCATCTTGAAGAGCAAAAGCTCAACC
CCGATGAGCCTGTAGTCGAGGACGACGATGATGAGGATGATGATGAGGAG
GATGAGGATGATGACAAGGATGAAGACGATGTGGAAGGGAAAGGAGATGG
AAGTGGTCGCTCAAAACAGAGCAGGAGTGAAAAGAAGAGTCGGAAAGCAA
TGTTGAAACTTGGAATGAAGCCAATCCCTGGCGTCAGTCGAGTTACAGTT
AAAAAGAGCAAAAATATTTTGTTTGTTATCTCCAAACCAGATGTTTTCAA
GAGTCCTACATCTGACACATACATTGTCTTTGGGGAAGCAAAGATCGAGG
ATCTGAGTTCACAACTGCAAACTCAGGCTGCAGAGCAGTTCAAGGTCCCT
CCTCCTACACAGGTAATGTGGCATCAAAGCCTGAGTCATCGGCCATGGTT
CAAGATGACGAAGAAGTAGATGAGACTGGTGTGGAGCCAAAGGACATTGA
GTTGGTAATGACTCAAGCTGGGGTACCGAGGTCAAGGGCTGTG
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