CF509779

Overview
NameCF509779
Unique NameCF509779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.049e-66
Identity = 127/231 (54.98%), Postives = 168/231 (72.73%), Query Frame = 3
Query:    3 LSVEKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIK 689
            L+VE+AI+ K+LFILD+HD L+P++ +IN+    KTYA+RT+FF    G L PLAIELS P  +         +Y   ++    +IW LAKA+V  ND+  HQLV+HWL THA +EP+++AT+RQLS +HP+YKLL PH R T+ IN+LAR+SL+N  GIIE +F  GRYA+ELS+  YK  W    +ALP DL++RG+A +DPS P GV+LVIEDYPYA+DGL IW AIK
Sbjct:  302 LTVEQAIQSKKLFILDHHDYLIPYLRRINASAT-KTYATRTIFFLKSDGTLAPLAIELSKPHPQGDEHGPVSEVYVPAYEGVEAYIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFVLATNRQLSVVHPVYKLLFPHYRDTMNINSLARKSLVNADGIIEKTFLWGRYALELSAVIYKD-WSLHDQALPNDLVKRGVAVKDPSAPHGVKLVIEDYPYASDGLEIWDAIK 530          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.160e-65
Identity = 122/231 (52.81%), Postives = 168/231 (72.73%), Query Frame = 3
Query:    3 LSVEKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNK--HIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIK 689
            L+V++A+E+ +L+ILD+HD L+P++ +INS  + KTYA+RT+      G L+PLAIELSLP  +         ++T         +W+LAKA+   ND+G HQL++HWL THA +EP+IIA++RQLS +HPI+KLLHPH R T+ INALAR  LIN  G++E +  P RYAME+SS+ YK+ W F  +ALP DLL+RG+A EDP+  +GV+L+IEDYP+A DGL IW AIK
Sbjct:  437 LNVQEALEQNKLYILDHHDALMPYLTRINST-NTKTYATRTLLLLQADGTLKPLAIELSLPHAQGESYGSVSKVFTPAEKGVEGSVWQLAKAYAAVNDSGYHQLISHWLQTHAVIEPFIIASNRQLSVVHPIHKLLHPHFRDTMNINALARHVLINSDGVLERTVFPSRYAMEMSSSIYKN-WVFTEQALPKDLLKRGVAVEDPNSDNGVKLLIEDYPFAVDGLEIWSAIK 665          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.757e-65
Identity = 122/231 (52.81%), Postives = 163/231 (70.56%), Query Frame = 3
Query:    3 LSVEKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRS--SPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIK 689
            L+V++A++  RL+ILD+HD  +PF+  +N L     YA+RT+FF    G L PLAIELS P  +   +     +YT        W+W+LAKA+V  ND+G HQL++HWL THA MEP++IAT+RQLS  HP++KLL PH R T+ INALARQ+LIN GGI E +  PG+YA+ +SS  YK+ W F  + LPADL++RG+A ED + P  VRL+I+DYPYAADGL IW AI+
Sbjct:  415 LTVQQALDSNRLYILDHHDRFMPFLIDVNGLEGNFIYATRTLFFLRGDGTLAPLAIELSEPMIQGDVTAAKSTVYTPASTGVEAWVWQLAKAYVAVNDSGWHQLISHWLNTHAVMEPFVIATNRQLSVTHPVHKLLSPHYRDTMTINALARQTLINAGGIFEMTVFPGKYALWMSSMVYKN-WNFTEQGLPADLIKRGVAVEDATSPYKVRLLIKDYPYAADGLEIWHAIE 644          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.757e-65
Identity = 126/230 (54.78%), Postives = 166/230 (72.17%), Query Frame = 3
Query:    6 SVEKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRS--SPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIK 689
            +V++A+  +RLF+LDYHD+ +P+I +IN     K YA+RT+ F  + G L+P+AIELSLP      S     +     +     IW LAKA+V  ND+  HQL++HWL THA +EP+IIAT+R LS++HPIYKLL PH R T+ INALARQSLIN  GIIE SF P ++++E+SSA YK+ W F  +ALPADL++RG+A +DPS P G+RL+IEDYPYA DGL IW AIK
Sbjct:  423 TVDEALASRRLFMLDYHDVFMPYIRRINQTY-AKAYATRTILFLRENGTLKPVAIELSLPHPAGDLSGAVSQVILPAKEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFIIATNRHLSALHPIYKLLTPHYRDTMNINALARQSLINADGIIEKSFLPSKHSVEMSSAVYKN-WVFTDQALPADLIKRGVAIKDPSAPHGLRLLIEDYPYAVDGLEIWAAIK 650          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.519e-65
Identity = 121/231 (52.38%), Postives = 162/231 (70.13%), Query Frame = 3
Query:    3 LSVEKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIK 689
            L+V+ A++  RLFILD+HD  +PF++KIN L     YASRT+      G L+PLAIELSLP            +YT  +      IW+LAKA+   ND+  HQL++HWL THA +EP++IAT+RQLS +HP++KLL PH R T+ INALARQ+LIN  GI E +  PG+YA+E+SS  YK+ W+F  +ALP DL++RG+A  DP+ P  VRL+I+DYPYA DGL+IW AI+
Sbjct:  422 LTVQNALKGNRLFILDHHDHFMPFLDKINKLDGNFIYASRTILLLKDDGTLKPLAIELSLPHPDGQQHGAVSKVYTPANTGVESQIWQLAKAYASVNDSAWHQLISHWLNTHAVIEPFVIATNRQLSVVHPVHKLLSPHYRDTMNINALARQTLINADGIFEKTVFPGKYALEMSSVVYKN-WKFTEQALPVDLVKRGVAVPDPTSPYNVRLLIKDYPYAVDGLVIWWAIE 651          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 7.519e-65
Identity = 122/232 (52.59%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    3 LSVEKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRS--SPQNKHIYTHGHDATTH-WIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIK 689
            L+V++A+E  RL+ILD+HD  +PF+  +N+LP    YA+RT+FF    G L PLAIELS P  +   +     +YT     +   W+W+LAKA+V  ND+G HQLV+HWL THA MEP++I+T+R LS  HP++KLL PH R T+ INALARQ+LIN GGI E +  PG++A+ +S+  YK  W+F  + LP DL++RGMA EDPS P  VRL++ DYPYAADGL IW AI+
Sbjct:  410 LTVQQALESNRLYILDHHDRFMPFLIDVNNLPGNFIYATRTLFFLRGDGRLTPLAIELSEPIIQGGLTTAKSKVYTPVPSGSVEGWVWELAKAYVAVNDSGWHQLVSHWLNTHAVMEPFVISTNRHLSVTHPVHKLLSPHYRDTMTINALARQTLINAGGIFEMTVFPGKFALGMSAVVYKD-WKFTEQGLPDDLIKRGMAVEDPSSPYKVRLLVSDYPYAADGLAIWHAIE 640          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.874e-64
Identity = 121/231 (52.38%), Postives = 164/231 (71.00%), Query Frame = 3
Query:    3 LSVEKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSP--QNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIK 689
            L+V++A+   +LFIL++HD+++P++ +IN+    K YASRT+ F    G L+PLAIELS P            +YT         IW+LAKA+V  ND GVHQL++HWL THA +EP++IAT+RQLS +HPI+KLL+PH R T+ INA ARQ L+N GG++E++    ++AME+S+  YK  W F  +ALPADL++RG+A ED S P GVRL+IEDYPYA DGL IW AIK
Sbjct:  417 LTVDEAMNNNKLFILNHHDVIIPYLRRINTTIT-KAYASRTLLFLQDNGSLKPLAIELSFPHPDGDQFGVTSKVYTPSDQGVESSIWQLAKAYVAVNDVGVHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLYPHFRDTMNINASARQLLVNAGGVLESTVFQSKFAMEMSAVVYKD-WVFPDQALPADLVKRGVAVEDSSSPHGVRLLIEDYPYAVDGLEIWSAIK 645          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.418e-63
Identity = 123/231 (53.25%), Postives = 160/231 (69.26%), Query Frame = 3
Query:    3 LSVEKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIK 689
            L+V +AI+  RLFIL++HD+++P + KIN   + K YASRT+ F      L+PLAIELSLP            +YT         IW+ AKA+V  ND G+HQL++HWL THA +EP+++AT+R LS +HPI+KLLHPH R T+ INALAR++L   GG  E S  P +Y+ME+S+AAYK  W F  +ALPADLL+RG+A ED S P G+RL+I DYPYA DGL IW AIK
Sbjct:  415 LTVNEAIKSNRLFILNHHDIVMPLLRKINMSANTKAYASRTLLFLQDDRTLKPLAIELSLPHPDGDQFGTVSKVYTPADQGVEGSIWQFAKAYVAVNDMGIHQLISHWLNTHAVIEPFVVATNRHLSVLHPIHKLLHPHFRNTMNINALARETLTYDGG-FETSLFPAKYSMEMSAAAYKD-WVFPEQALPADLLKRGVAVEDLSSPHGIRLLILDYPYAVDGLEIWAAIK 643          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.587e-61
Identity = 122/231 (52.81%), Postives = 158/231 (68.40%), Query Frame = 3
Query:    6 SVEKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQN--KHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYT-LEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIK 689
            ++++A+   RLFILDYHD  +PF+ +IN     K YA+RT+ F  + G L+P+AIELSLP            +     +     IW LAKA+V  ND+  HQL++HWL THA +EP++IAT+RQLS +HPI KLL PH R T + INALAR SLIN  G+IE SF P +YA+E+SSA YK +W F  +ALP DL++R MA +D S P G+RL+IEDYPYA DGL IW AIK
Sbjct:  420 TIDEALASGRLFILDYHDTFIPFLRRINET-SAKAYATRTILFLKENGTLKPVAIELSLPHPDGDKSGFVSKVILPADEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFVIATNRQLSVVHPINKLLAPHYRDTMMNINALARDSLINANGLIERSFLPSKYAVEMSSAVYK-YWVFTDQALPNDLIKRNMAVKDSSSPYGLRLLIEDYPYAVDGLEIWTAIK 648          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.587e-61
Identity = 128/232 (55.17%), Postives = 160/232 (68.97%), Query Frame = 3
Query:    3 LSVEKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLP-PTRSS--PQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIK 689
            ++VE AI+  RLF  D+HD L P++ KIN+    K YA+RTV F    G L+PLAIELS P P   S  P +K +Y    +     IW LAKA V  ND+  HQLV+HWL THA +EP+IIAT+R LS +HPI+KLL PH R T+ INALAR  L+N  GIIE++F  G YAME+S+  YK  W F  + LP DL++RG+A +DPS P GVRL+IEDYPYA+DGL IW AIK
Sbjct:  421 VTVEGAIQTNRLFTPDHHDALFPYLRKINATAT-KAYATRTVLFLQDNGTLKPLAIELSTPHPDGDSFGPVSK-VYLPASEGVEASIWLLAKAFVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGNYAMEMSAVVYKD-WVFPDQGLPNDLIKRGVAVKDPSSPHGVRLLIEDYPYASDGLEIWAAIK 649          
The following BLAST results are available for this feature:
BLAST of CF509779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOXB_PHAVU1.049e-6654.98Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOX5_ARATH1.160e-6552.81Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ORYSJ5.757e-6552.81Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX2_SOYBN5.757e-6554.78Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX4_ORYSJ7.519e-6552.38Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX1_HORVU7.519e-6552.59Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX1_SOLTU4.874e-6452.38Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOXB_SOLLC1.418e-6353.25Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX2_PEA6.587e-6152.81Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX1_LENCU6.587e-6155.17Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-287 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509779 ID=CF509779; Name=CF509779; organism=Citrus sinensis; type=EST; length=691bp
GACTGAGCGTGGAAAAGGCTATTGAGGAGAAGAGATTGTTTATACTTGAT
TATCATGACTTGCTGCTGCCATTTATCGAGAAAATAAACTCCTTGCCAGA
TAGAAAAACATATGCCTCTAGGACAGTTTTCTTCTATAACAAGGCTGGCA
TGCTGAGGCCACTAGCTATAGAGCTATCCCTTCCTCCAACACGTTCTTCG
CCTCAGAATAAACACATTTACACTCATGGGCATGATGCTACAACACATTG
GATTTGGAAGCTGGCCAAAGCTCATGTCTGTTCAAATGATGCTGGAGTCC
ACCAACTAGTAAATCACTGGTTGATGACTCATGCTTCTATGGAGCCTTAT
ATAATTGCAACACACAGACAGCTTAGTTCAATGCACCCCATTTATAAGTT
GCTTCATCCTCACATGCGCTACACGCTAGAAATTAATGCACTTGCACGGC
AAAGTTTAATAAACGGAGGGGGTATAATTGAGGCTTCTTTCAGCCCAGGA
AGGTATGCCATGGAGCTAAGCTCTGCAGCCTACAAGAGTTTTTGGAGGTT
TGACATGGAGGCATTGCCTGCAGATCTTTTGCGCAGGGGTATGGCTGAGG
AGGATCCTTCAATGCCTAGCGGTGTAAGACTTGTGATTGAAGACTACCCG
TATGCAGCAGATGGGCTTCTTATCTGGTGTGCTATAAAGAG
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