CF509779

Overview
NameCF509779
Unique NameCF509779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOXA_PSEAE (Arachidonate 15-lipoxygenase OS=Pseudomonas aeruginosa GN=loxA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 68/233 (29.18%), Postives = 110/233 (47.21%), Query Frame = 3
Query:    6 SVEKAIEEKRLFILDYHDL--LLPF--IEKINSLPDRKTYASRTVFFYNK-AGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIK 689
            S+ +A   +RL++LDY +L  L P   ++K+ +      YA   +F   K    L P+AI+    P   +     +     ++  +W W++AK  V   +   H++  H   TH   E + +AT R L+  HP++ LL PH   TL IN  A + L+   G I+  F+      + ++   +  + F    LP  L  R +  +DP       L + DYPY  DGLL+W AI+
Sbjct:  273 SLLEAAASRRLYLLDYAELGKLAPSGAVDKLLT-GTGFAYAPIALFALGKDRARLLPVAIQCGQDP---ATHPMFVRPAESESDLYWGWQMAKTVVQVAEENYHEMFVHLAQTHLVSEAFCLATQRTLAPSHPLHVLLAPHFEGTLFINEGAARILLPSAGFIDVMFAAPIQDTQATAGGNRLGFDFYRGMLPESLKARNV--DDP-------LALPDYPYRDDGLLVWNAIR 492          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOX_PSEAE (Oleic acid lipoxygenase OS=Pseudomonas aeruginosa GN=lox PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 66/233 (28.33%), Postives = 110/233 (47.21%), Query Frame = 3
Query:    6 SVEKAIEEKRLFILDYHDL--LLPF--IEKINSLPDRKTYASRTVFFYNK-AGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIK 689
            S+ +A   +RL++LDY +L  L P   ++K+ +      YA   +F   K    L P+AI+    P   +     +     ++  +W W++AK  V   +   H++  H   TH   E + +AT R L+  HP++ LL PH   TL +N  A + L+   G I+  F+      + ++   +  + F    LP  L  R +  +DP+        + DYPY  DGLL+W AI+
Sbjct:  273 SLLEAAASRRLYLLDYAELGKLAPSGAVDKLLT-GTGFAYAPIALFALGKDRARLLPVAIQCGQDP---ATHPMFVRPAESESDLYWGWQMAKTVVLVAEENYHEMFVHLAQTHLVSEAFCLATQRTLAPSHPLHVLLAPHFEGTLFVNEGAARILLPSAGFIDVMFAAPIQDTQATAGGNRLGFDFYRGMLPESLKARNV--DDPA-------ALPDYPYRDDGLLVWNAIR 492          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOX12_HUMAN (Arachidonate 12-lipoxygenase, 12S-type OS=Homo sapiens GN=ALOX12 PE=1 SV=4)

HSP 1 Score: 83.9593 bits (206), Expect = 8.430e-16
Identity = 59/166 (35.54%), Postives = 86/166 (51.81%), Query Frame = 3
Query:    9 VEKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKA--GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPG 500
            +EK ++   LF  D+  +LL  I   N +   K Y +  +        G L+P+ I++  PP  SSP      T    +     W LAK+ V ++D  +H++  H L TH   E   +AT R L  +HPI+K L PH+RYT+EIN  AR  LI+ GGI + + S G
Sbjct:  264 LEKELQNGSLFEADF--ILLDGIPA-NVIRGEKQYLAAPLVMLKMEPNGKLQPMVIQIQ-PPNPSSPTP----TLFLPSDPPLAWLLAKSWVRNSDFQLHEIQYHLLNTHLVAEVIAVATMRCLPGLHPIFKFLIPHIRYTMEINTRARTQLISDGGIFDKAVSTG 421          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOX12_PIG (Arachidonate 12-lipoxygenase, 12S-type OS=Sus scrofa GN=ALOX12 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 66/183 (36.07%), Postives = 85/183 (46.45%), Query Frame = 3
Query:  147 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIE--ASFSPGRYAMELSSAA----YKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIW 677
            G L P+ I+L LP   S      + T         +W LAK  V S+D  +H+L +H L  H   E   +AT R L S+HPI+KLL PH RYT+EIN  AR  L++  GI +   S   G +   L  AA    Y SF        P DL  RG+            L +E   YA D L +W
Sbjct:  310 GKLLPMVIQLQLPREGSPLPPLFLPTD-----PPMVWLLAKCWVRSSDFQLHELHSHLLRGHLMAEVIAVATMRCLPSIHPIFKLLIPHFRYTMEINVRARNGLVSDLGIFDQVVSTGGGGHVELLRRAAALLTYSSF------CPPDDLADRGL------------LGVESSFYAQDALRLW 469          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LOX12_MOUSE (Arachidonate 12-lipoxygenase, 12S-type OS=Mus musculus GN=Alox12 PE=1 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 74/226 (32.74%), Postives = 106/226 (46.90%), Query Frame = 3
Query:    9 VEKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTY--ASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYA-MELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIW 677
            +EK ++   LF  D+  +LL  I   N +     Y  A   +   +  G L P+AI++  PP  SSP      T    +     W LAK  V ++D  + +L  H L TH   E   +AT R L  +HPI+KLL PH+RYT+EIN  +R  LI+ GGI +   S G    ++L + A      +     P DL  RG+      +PS +        YA D L +W
Sbjct:  264 LEKELKNGSLFEADF--ILLDGIPA-NVIRGEPQYLAAPLVMLRMDPGGKLLPMAIQIQ-PPNPSSPAP----TLFLPSDPPLAWLLAKIWVRNSDFQLQELQFHLLNTHLVAEVIAVATMRCLPGLHPIFKLLVPHIRYTMEINTRSRTQLISDGGIFDQVVSTGGGGHVQLLTRAVAQL-TYHSLCPPDDLANRGLLR----IPSAL--------YARDALQLW 468          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LX12B_RAT (Arachidonate 12-lipoxygenase, 12R type OS=Rattus norvegicus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 66/236 (27.97%), Postives = 106/236 (44.92%), Query Frame = 3
Query:    9 VEKAIEEKRLFILDYHDLL-LPFIEKINSLPDRKTY--ASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAME------LSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIK 689
            ++  +E+  +++ DY  L  +P +E    L  +K +  A   +  +   G + P+AI+LS  P    P    I+       + W W LAK  V   +   H+ V H L +H   E + +A  R L   HP+YKLL PH RY ++IN++ R  L+N GG+   + S G           LS   YKS        +P D + RG+ +            +  Y +  D L +W A++
Sbjct:  304 LQAELEKGNIYLADYRILDGIPTVE----LNGQKQHHCAPICLLHFGPDGNMMPIAIQLSQTPGPDCP----IFLPND---SEWDWLLAKTWVRYAEFYSHEAVAHLLESHLIGEAFCLALLRNLPMCHPLYKLLIPHTRYNVQINSIGRALLLNKGGLSARAMSLGLEGFAQVMVRGLSELTYKSL------CIPNDFVERGVQD------------LPGYYFRDDSLAVWYAME 510          
BLAST of CF509779 vs. ExPASy Swiss-Prot
Match: LX12B_MOUSE (Arachidonate 12-lipoxygenase, 12R type OS=Mus musculus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 65/234 (27.78%), Postives = 103/234 (44.02%), Query Frame = 3
Query:    9 VEKAIEEKRLFILDYHDLL-LPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAME------LSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIK 689
            ++  +E   +++ DY  L  +P +E +N        A   +  +   G + P+AI+LS  P    P    I+       + W W LAK  V   +   H+ V H L +H   E + +A  R L   HP+YKLL PH RY ++IN++ R  L+N GG+   + S G           LS   YKS        +P D + RG+ +            +  Y +  D L +W A++
Sbjct:  304 LQAELERGNIYLADYRILDGIPTVE-LNGQQQHHC-APMCLLHFGPDGNMMPIAIQLSQTPGPDCP----IFLPND---SEWDWLLAKTWVRYAEFYSHEAVAHLLESHLIGEAFCLALLRNLPMCHPLYKLLIPHTRYNVQINSIGRALLLNKGGLSARAMSLGLEGFAQVMVRGLSELTYKSL------CIPNDFVERGVQD------------LPGYYFRDDSLAVWYAME 510          
The following BLAST results are available for this feature:
BLAST of CF509779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOXA_PSEAE5.838e-1729.18Arachidonate 15-lipoxygenase OS=Pseudomonas aerugi... [more]
LOX_PSEAE9.958e-1728.33Oleic acid lipoxygenase OS=Pseudomonas aeruginosa ... [more]
LOX12_HUMAN8.430e-1635.54Arachidonate 12-lipoxygenase, 12S-type OS=Homo sap... [more]
LOX12_PIG1.101e-1536.07Arachidonate 12-lipoxygenase, 12S-type OS=Sus scro... [more]
LOX12_MOUSE4.184e-1532.74Arachidonate 12-lipoxygenase, 12S-type OS=Mus musc... [more]
LX12B_RAT5.464e-1527.97Arachidonate 12-lipoxygenase, 12R type OS=Rattus n... [more]
LX12B_MOUSE5.464e-1527.78Arachidonate 12-lipoxygenase, 12R type OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-287 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509779 ID=CF509779; Name=CF509779; organism=Citrus sinensis; type=EST; length=691bp
GACTGAGCGTGGAAAAGGCTATTGAGGAGAAGAGATTGTTTATACTTGAT
TATCATGACTTGCTGCTGCCATTTATCGAGAAAATAAACTCCTTGCCAGA
TAGAAAAACATATGCCTCTAGGACAGTTTTCTTCTATAACAAGGCTGGCA
TGCTGAGGCCACTAGCTATAGAGCTATCCCTTCCTCCAACACGTTCTTCG
CCTCAGAATAAACACATTTACACTCATGGGCATGATGCTACAACACATTG
GATTTGGAAGCTGGCCAAAGCTCATGTCTGTTCAAATGATGCTGGAGTCC
ACCAACTAGTAAATCACTGGTTGATGACTCATGCTTCTATGGAGCCTTAT
ATAATTGCAACACACAGACAGCTTAGTTCAATGCACCCCATTTATAAGTT
GCTTCATCCTCACATGCGCTACACGCTAGAAATTAATGCACTTGCACGGC
AAAGTTTAATAAACGGAGGGGGTATAATTGAGGCTTCTTTCAGCCCAGGA
AGGTATGCCATGGAGCTAAGCTCTGCAGCCTACAAGAGTTTTTGGAGGTT
TGACATGGAGGCATTGCCTGCAGATCTTTTGCGCAGGGGTATGGCTGAGG
AGGATCCTTCAATGCCTAGCGGTGTAAGACTTGTGATTGAAGACTACCCG
TATGCAGCAGATGGGCTTCTTATCTGGTGTGCTATAAAGAG
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