CF509787

Overview
NameCF509787
Unique NameCF509787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509787 vs. ExPASy Swiss-Prot
Match: PSB2_SCHPO (Probable proteasome subunit beta type-2 OS=Schizosaccharomyces pombe GN=SPAC31A2.04c PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.663e-28
Identity = 64/145 (44.14%), Postives = 92/145 (63.45%), Query Frame = 3
Query:   21 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMD 449
            ME +  + G  F +  + +SAV  I V K ++DK  +L+SH L+   GE GD   F E+I  N+SLY  R+ + L+  A A+FTR +LAT+LR + PY VNILLAGY+   G P L+++DY+AT  +V  A  GY S++ LS+ D
Sbjct:    1 MESLLAVQGQDFVLTASSSSAVRGITVLKPDDDKSQILNSHNLMLYCGEAGDTTNFAEYIAANISLYTLRHNLNLSPEATASFTRKQLATSLRSRKPYQVNILLAGYETNLGKPELFWLDYLATCVRVPYACQGYSSFYCLSIFD 145          
BLAST of CF509787 vs. ExPASy Swiss-Prot
Match: PSB2_PICGU (Probable proteasome subunit beta type-2 OS=Pichia guilliermondii GN=PRO2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.539e-26
Identity = 65/146 (44.52%), Postives = 90/146 (61.64%), Query Frame = 3
Query:   21 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMD 449
            M+ V G+  +  T++    +A   I V K  +DK   L+SH L+A SGE GD VQF E+IQ N  LY  R N   L+  A A+F R +LAT++R + PY VN+LLAGYD  TG PSL +IDY+ T  ++  AA GY  ++  S++D
Sbjct:    1 MDIVLGIRVEDCTLVATSKAATRGISVLKDTDDKTRQLNSHNLMAYSGEAGDTVQFAEYIQANTQLYTMRENDTELSPKATASFVRNQLATSIRSRKPYQVNVLLAGYDTNTGKPSLNWIDYLGTQVELPYAAHGYAGFYCTSLLD 146          
BLAST of CF509787 vs. ExPASy Swiss-Prot
Match: PSB2_YEAST (Proteasome component C11 OS=Saccharomyces cerevisiae GN=PRE1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 2.080e-23
Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 3
Query:   21 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMD 449
            M+ + G+      IL +  +    I V K ++DK   L  H L++ +GE GD VQF E+IQ N+ LY  R    L+  A ++F R ELA ++R + PY VN+L+ GYDK+   P LY IDY+ T  ++   A GY  +++ S++D
Sbjct:    1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLD 145          
BLAST of CF509787 vs. ExPASy Swiss-Prot
Match: PSB2_DROME (Probable proteasome subunit beta type-2 OS=Drosophila melanogaster GN=Prosbeta4R2 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 3.548e-23
Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 3
Query:   21 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMM 446
            ME + G+ G  F +L +DT    S++  K ++ KI  L    ++A  G+ GD +QFT+FI KN+ LY+  +G  L+  +AA+FTR  LA  +R  + Y V +LLAGYD   GP L+YID       ++ A  G+GS F  S++
Sbjct:    3 METILGIKGPDFVMLASDTMQAKSLVFMKDDQSKIHRLSDFNMMATVGDGGDTIQFTDFISKNLHLYKISHGYHLSAKSAAHFTRKTLADYIRTNTRYQVAMLLAGYDAVEGPDLHYIDSYGAAQSINHAGHGWGSMFCGSIL 145          
BLAST of CF509787 vs. ExPASy Swiss-Prot
Match: PSB2_TRYBB (Proteasome subunit beta type-2 OS=Trypanosoma brucei brucei GN=PSB4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.924e-19
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 3
Query:   48 DGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATALRKSP--YMVNILLAGY--------DKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMD 449
            D   +  A  +A + I +    EDKI  LDSHK++A +GE G R  F E+++ N++L + R +G  ++T A A+F R  LA ALR     Y VN LLAG+        D  TG  LYY+DY+ TL +V     GYG+ F  +M+D
Sbjct:   12 DFVLVAAAGLNAFYYIKI-TDTEDKITELDSHKVVACAGENGPRTHFVEYVKCNMALKKMREHGRMISTHATASFMRNTLAGALRSRDGLYPVNCLLAGFDVPASAEDDVATGAHLYYLDYLGTLQEVPYGCHGYGAPFVTAMLD 155          
BLAST of CF509787 vs. ExPASy Swiss-Prot
Match: PSB2_ENCCU (Probable proteasome subunit beta type-2 OS=Encephalitozoon cuniculi GN=PRE1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 39/143 (27.27%), Postives = 72/143 (50.35%), Query Frame = 3
Query:   21 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMD 449
            M+   G+ G  F I+ ADT    SILV K N +K  V+    ++A +G  GD  +   ++ ++    + +NGI L+ +  A+  + ++  +LR+    ++ ++AG   E    L+ +D    +  V   A GY +YF   ++D
Sbjct:    1 MDSSIGIKGRNFAIVAADTKISSSILVVKENHEKFQVIKDRIVMAMTGNQGDAFRTMLYVSESALYEEIQNGIELSPSVLAHMIQNKVHESLRRRQLDISSIVAGRGPEK-YDLWSVDKYGAISSVPFCASGYAAYFVYGILD 142          
The following BLAST results are available for this feature:
BLAST of CF509787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSB2_SCHPO3.663e-2844.14Probable proteasome subunit beta type-2 OS=Schizos... [more]
PSB2_PICGU1.539e-2644.52Probable proteasome subunit beta type-2 OS=Pichia ... [more]
PSB2_YEAST2.080e-2337.93Proteasome component C11 OS=Saccharomyces cerevisi... [more]
PSB2_DROME3.548e-2339.16Probable proteasome subunit beta type-2 OS=Drosoph... [more]
PSB2_TRYBB6.924e-1940.00Proteasome subunit beta type-2 OS=Trypanosoma bruc... [more]
PSB2_ENCCU1.398e-1127.27Probable proteasome subunit beta type-2 OS=Encepha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-295 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509787 ID=CF509787; Name=CF509787; organism=Citrus sinensis; type=EST; length=449bp
CAACAACAGAACAGTAAGGAATGGAGTGCGTATTTGGTCTTGTCGGCGAC
GGCTTCACAATCTTAGTGGCCGACACGTCGGCAGTCCACAGTATCTTGGT
TCATAAATCGAACGAGGACAAGATCATGGTCCTCGACTCTCACAAACTCA
TCGCCGCCAGTGGCGAACCCGGTGACCGTGTTCAATTTACGGAGTTCATT
CAGAAGAATGTGTCGTTGTATCAATTTCGTAACGGAATTCCATTGACTAC
TGCTGCGGCGGCGAACTTTACCCGAGGAGAGCTTGCTACTGCTCTGAGAA
AGAGCCCTTACATGGTTAACATCCTTCTAGCTGGGTATGACAAGGAGACA
GGACCATCTCTCTACTACATTGACTACATTGCAACCCTTCACAAAGTTGA
TAAGGCAGCTTTTGGTTATGGATCCTATTTTTCGCTCTCCATGATGGAC
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