CF509788

Overview
NameCF509788
Unique NameCF509788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length318
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC2_METTH (3-isopropylmalate dehydratase large subunit 2 OS=Methanobacterium thermoautotrophicum GN=leuC2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.481e-27
Identity = 58/105 (55.24%), Postives = 71/105 (67.62%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GAFG FATG+G TD   V  TGK    VP  +R  + GE   ++ AKD+IL IIGEI V GATY+S+EF G T+E + +  RMT+CNM VE G K
Sbjct:  124 VGADSHTCTYGAFGAFATGMGATDMAMVFATGKTWFMVPEAMRIEVTGEPEGHVYAKDVILHIIGEIGVDGATYRSVEFTGDTIESMDVSGRMTICNMAVEMGAK 228          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC1_METTH (3-isopropylmalate dehydratase large subunit 1 OS=Methanobacterium thermoautotrophicum GN=leuC1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.481e-27
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +GTDSHTCT GA G FATGIG+TD   V  TGK+  +VP TLRF + G++ +++ AKD+IL IIG +   GATY + EF G TV  +S+ +RM L NM +E GGK
Sbjct:  119 VGTDSHTCTHGALGAFATGIGSTDMAMVFATGKLWFRVPETLRFDVRGKLREHVYAKDVILNIIGRVGADGATYMACEFAGETVAEMSVSDRMVLSNMAIEMGGK 223          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CLOPH (3-isopropylmalate dehydratase large subunit OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=leuC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.934e-27
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TG+G+TD G  + TGK   KVP  ++F+L GE  +++  KD+IL IIG I V GA YKSMEFVG  ++ L+M++R T+ NM +EAG K
Sbjct:  120 IGADSHTCTYGALGAFSTGVGSTDMGAGMITGKAWFKVPAAIKFILTGEPKEWVSGKDVILHIIGMIGVDGALYKSMEFVGAGIKNLTMDDRFTIANMAIEAGAK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_DESVM (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=leuC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.526e-27
Identity = 56/105 (53.33%), Postives = 73/105 (69.52%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT G  G FATG G+TD    +  G+   KVPPT+R    G +P ++ AKDLIL++IGEI V GA Y+++EF G  +E LS+E RMT+ NM +EAGGK
Sbjct:  120 VGADSHTCTYGGLGAFATGFGSTDVAGAMALGETWFKVPPTIRATFTGTLPKWVGAKDLILRLIGEIGVDGALYRALEFDGAAIEALSVEGRMTIANMAIEAGGK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CAMC5 (3-isopropylmalate dehydratase large subunit OS=Campylobacter curvus (strain 525.92) GN=leuC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.309e-27
Identity = 54/105 (51.43%), Postives = 76/105 (72.38%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TG+G+TD  + + TGK   KVPPT++ V  G++  ++  KDLIL+II +I V GA YK++EF G T++ L M+ R ++CNM +EAGGK
Sbjct:  119 IGADSHTCTHGALGAFSTGMGSTDLAYAMITGKNWFKVPPTIKVVFRGKLGRHVYGKDLILEIIRQIGVDGARYKALEFCGETIDALDMDGRFSMCNMAIEAGGK 223          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CLOB8 (3-isopropylmalate dehydratase large subunit OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=leuC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.351e-27
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TGIG+TD    + TGK   KVP  L+FVL  +   ++  KD+IL IIG I V GA YKSMEFVG  ++ LSM++R T+ NM +EAGGK
Sbjct:  120 IGADSHTCTYGALGAFSTGIGSTDMAAGMATGKCWFKVPSALKFVLKNKPAKWISGKDIILHIIGMIGVDGALYKSMEFVGDGLQYLSMDDRFTMANMAIEAGGK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC2_METAC (3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina acetivorans GN=leuC2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.600e-27
Identity = 52/105 (49.52%), Postives = 76/105 (72.38%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G+DSHTC  G+ G F+TGIG+TD   V  TGK+  +VP T RF ++G++P+ + +KDLIL +IG++ V GA Y + E+ G+T+  LS+ ERMT+ NM +E GGK
Sbjct:  119 VGSDSHTCAYGSLGAFSTGIGSTDMAAVFATGKLWFRVPETFRFEVEGKLPERVYSKDLILHLIGDVGVEGARYMAAEYAGSTIRSLSIPERMTISNMAIEMGGK 223          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_NITSB (3-isopropylmalate dehydratase large subunit OS=Nitratiruptor sp. (strain SB155-2) GN=leuC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.254e-26
Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G FATG+G+TD  + + TGK   KVPP+++ +  G++ +++  KDLIL++I  I V GA YK++EF G T+E L M+ R +LCNM +EAG K
Sbjct:  119 IGADSHTCTHGALGAFATGMGSTDLAYGMITGKNWFKVPPSIKVIYTGKLGEHVYGKDLILELIRRIGVDGALYKALEFTGDTIENLDMDGRFSLCNMAIEAGAK 223          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_NAUPA (3-isopropylmalate dehydratase large subunit OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=leuC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.254e-26
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TG+G+TD  F + TGK   K+P +++ V  GE  +++  KDLIL++I  I V GA YK++EF G  +E L M++RM+LCNM +EAG K
Sbjct:  119 IGADSHTCTHGALGAFSTGMGSTDIAFCMITGKSWFKIPESIKVVFKGERGEHVYGKDLILELIRRIGVDGALYKALEFTGEVIENLPMDDRMSLCNMAIEAGAK 223          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_DESVV (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=leuC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.254e-26
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT G  G FATG+G+TD    +  G+   KVPPT+R    G +P Y+ AKDLIL +IG I V GA Y+++EF G  +E L +E RMT+ NM +EAGGK
Sbjct:  120 VGADSHTCTYGGLGAFATGLGSTDVAGAMALGETWFKVPPTIRATFTGTLPAYVGAKDLILTLIGAIGVDGALYRALEFDGAAIEALDVEGRMTMANMAIEAGGK 224          
The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC2_METTH1.481e-2755.243-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC1_METTH1.481e-2754.293-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC_CLOPH1.934e-2753.333-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_DESVM2.526e-2753.333-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_CAMC54.309e-2751.433-isopropylmalate dehydratase large subunit OS=Cam... [more]
LEUC_CLOB87.351e-2755.243-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC2_METAC9.600e-2749.523-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC_NITSB1.254e-2650.483-isopropylmalate dehydratase large subunit OS=Nit... [more]
LEUC_NAUPA1.254e-2650.483-isopropylmalate dehydratase large subunit OS=Nau... [more]
LEUC_DESVV1.254e-2652.383-isopropylmalate dehydratase large subunit OS=Des... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-296 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bp
GTTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCAATTTG
CCACTGGCATTGGCAACACTGATGCAGGTTTTGTATTGGGCACAGGGAAA
GTCTTGCTCAAGGTGCCCCCAACTCTGAGATTTGTATTGGATGGTGAAAT
GCCTGATTATTTGCTTGCGAAGGATTTGATTTTACAAATAATTGGTGAAA
TCTCTGTGGCTGGTGCAACATATAAATCTATGGAGTTTGTTGGCACAACT
GTTGAACGTTTAAGTATGGAAGAGCGCATGACATTATGCAACATGGTTGT
CGAAGCTGGGGGAAAGAA
back to top