CF509883

Overview
NameCF509883
Unique NameCF509883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_RAT (Ornithine decarboxylase OS=Rattus norvegicus GN=Odc1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.270e-26
Identity = 73/161 (45.34%), Postives = 93/161 (57.76%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            LAA+G+ FDC S++EI+ V  LGV P+RIIYANPCK VS IKYAAS GV + T DS  EL K+   HPK+ L++RI + DDS A   L  K+GA      +  LL+ A+   + V+GVSFHVGS                   D       + M +LDIGG
Sbjct:   80 LAAIGTGFDCASKTEIQLVQGLGVPPERIIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRI-ATDDSKAVCRLSVKFGATLKTSRL--LLERAKELNIDVIGVSFHVGSGCTDPETFVQAVSDARCVFDMGTEVGFS-MYLLDIGG 236          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR1_XENLA (Ornithine decarboxylase 1 OS=Xenopus laevis GN=odc1-A PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.270e-26
Identity = 72/161 (44.72%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            L+ LG+ FDC S++EI+ V  +GVSP+RIIYANPCK VS IKYAAS GV   T DS  EL K+   HP + L++RI + DDS A   L  K+GA      +  LL+ A+   + ++GVSFHVGS                   D  A    N M +LDIGG
Sbjct:   80 LSILGAGFDCASKTEIQLVQSIGVSPERIIYANPCKQVSQIKYAASCGVEKMTFDSEVELMKVARNHPNAKLVLRI-ATDDSKAVCRLSVKFGATLKTSRL--LLERAKELNVDIIGVSFHVGSGCTDPQTYVQAVSDARCVFDMGAELGFN-MHLLDIGG 236          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_MUSPA (Ornithine decarboxylase OS=Mus pahari GN=Odc1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.284e-26
Identity = 73/161 (45.34%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            LAA G+ FDC S++EI+ V  LGV P+RIIYANPCK VS IKYAAS GV + T DS  EL K+   HPK+ L++RI + DDS A   L  K+GA      +  LL+ A+   + V+GVSFHVGS                   D       + M +LDIGG
Sbjct:   80 LAATGTGFDCASKTEIQLVQGLGVPPERIIYANPCKQVSQIKYAASSGVQMMTFDSEIELMKVARAHPKAKLVLRI-ATDDSKAVCRLSVKFGATLKTSRL--LLERAKELNIDVIGVSFHVGSGCTDPETFVQAVSDARCVFDMGTEVGFS-MYLLDIGG 236          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_MOUSE (Ornithine decarboxylase OS=Mus musculus GN=Odc1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.514e-26
Identity = 72/161 (44.72%), Postives = 93/161 (57.76%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            LAA+G+ FDC S++EI+ V  LGV  +R+IYANPCK VS IKYAAS GV + T DS  EL K+   HPK+ L++RI + DDS A   L  K+GA      +  LL+ A+   + V+GVSFHVGS                   D A     + M +LDIGG
Sbjct:   80 LAAIGTGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRI-ATDDSKAVCRLSVKFGATLKTSRL--LLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFS-MHLLDIGG 236          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR2_XENLA (Ornithine decarboxylase 2 OS=Xenopus laevis GN=odc1-B PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.060e-24
Identity = 68/161 (42.24%), Postives = 93/161 (57.76%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            LA LG+ FDC S++EIE V  +GV+P+RIIYANPCK +S IKYAA  GV + T D+  EL K+   HP + +++RI + DDS +   L  K+GA    +    LL+ A+   + V+GVSFHVGS                   + A+     KM +LDIGG
Sbjct:   79 LAELGAGFDCASKTEIELVQDVGVAPERIIYANPCKQISQIKYAAKNGVQMMTFDNEVELSKVSRSHPNARMVLRI-ATDDSKSSARLSVKFGA--PLKSCRRLLEMAKNLSVDVIGVSFHVGSGCTDSKAYTQAISDARLVFEMASE-FGYKMWLLDIGG 235          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_NEUCR (Ornithine decarboxylase OS=Neurospora crassa GN=spe-1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.163e-23
Identity = 61/124 (49.19%), Postives = 79/124 (63.71%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGS 376
            LAALG+ FDC S++EIE VL +GV P RIIYA PCK  S+++Y A  GV   T D+ +EL KI   +P ++L +RI + DDS +      K+GA     +   LL  A   GL+VVGVSFHVGS
Sbjct:  125 LAALGTGFDCASKAEIEQVLRMGVDPSRIIYAQPCKTNSYLRYVAQQGVRQMTFDNADELRKIARLYPDAELFLRILT-DDSSSLCRFSMKFGASLDSTD--GLLGLARQLGLNVVGVSFHVGS 245          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR2_DROME (Ornithine decarboxylase 2 OS=Drosophila melanogaster GN=Odc2 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.984e-23
Identity = 65/161 (40.37%), Postives = 90/161 (55.90%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            LA LG+ FDC S++E++ VL LGVSP+RII+A+PC+P SH++YA    V   TVD+  E+ K+R  +P S+L++R KS +   A  PL  KYG      +   L+  A+A GL V G SFHVGS                           +KM +LD+GG
Sbjct:   73 LADLGTGFDCASKNELKLVLGLGVSPERIIFAHPCRPASHLRYAKEQQVVNGTVDNEYEIYKLRKHYPDSNLIVRFKS-EAKKALCPLGDKYGCDAE-ADAAALMLLAKALGLKVTGTSFHVGSGCSEVEAYDRAIEKAENIF-KVGEMIGHKMELLDVGG 230          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_CANAL (Ornithine decarboxylase OS=Candida albicans GN=SPE1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.591e-23
Identity = 63/126 (50.00%), Postives = 85/126 (67.46%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGV--SPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGS 376
            L+ LG NFDC S++EI+ VL LG+  + +RIIYANPCK  S I++AA   VNLTTVD+V EL K+  +HP   +LIR+ + DDS A+  L +K+G   +   I  +L  A+  GL V GV+FHVGS
Sbjct:  117 LSELGVNFDCASKNEIDLVLSLGIHQAHERIIYANPCKTNSFIRHAADENVNLTTVDNVHELYKLAKFHPHCKILIRLIT-DDSTAQCQLSTKFGCDLN-TAIGEILPKAKELGLQVHGVAFHVGS 240          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_CAEEL (Ornithine decarboxylase OS=Caenorhabditis elegans GN=odc-1 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.679e-22
Identity = 61/125 (48.80%), Postives = 80/125 (64.00%), Query Frame = 2
Query:    5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMP-LLKAAEASGLSVVGVSFHVGS 376
            LA+LG  FDC S+ EI+ V+  GVS +RIIYANPCK  S I +A    V + T D+ EEL KI   HP +++++RI +  D  A  PL+ K+GA   P    P LLK A   G++VVG+SFHVGS
Sbjct:   82 LASLGCGFDCASKDEIDIVMGTGVSAERIIYANPCKTRSFIAHAMDRDVKMMTFDNPEELLKIAKLHPNAEMILRI-AVSDPTATCPLNLKFGA--DPIIAAPQLLKTASEEGINVVGISFHVGS 203          
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_CRIGR (Ornithine decarboxylase OS=Cricetulus griseus GN=ODC1 PE=2 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 8.334e-22
Identity = 65/153 (42.48%), Postives = 82/153 (53.59%), Query Frame = 2
Query:   29 DCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487
            DC S++EI+ V  LGV P+R+IYANPCK VS IKYAAS GV + T DS  EL K+   HPK   L+   + DDS A   L  K+GA      +  LL+ A+   + V+GVSFHVGS                   D       + M +LDIGG
Sbjct:   84 DCASKTEIQLVQGLGVPPERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKVTKLVLRIATDDSKAVCRLSVKFGATLRTSRL--LLERAKELNIDVIGVSFHVGSGCTDPETFVQALSDARCVFDMGTEVGFS-MYLLDIGG 233          
The following BLAST results are available for this feature:
BLAST of CF509883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
DCOR_RAT4.270e-2645.34Ornithine decarboxylase OS=Rattus norvegicus GN=Od... [more]
DCOR1_XENLA4.270e-2644.72Ornithine decarboxylase 1 OS=Xenopus laevis GN=odc... [more]
DCOR_MUSPA7.284e-2645.34Ornithine decarboxylase OS=Mus pahari GN=Odc1 PE=2... [more]
DCOR_MOUSE9.514e-2644.72Ornithine decarboxylase OS=Mus musculus GN=Odc1 PE... [more]
DCOR2_XENLA3.060e-2442.24Ornithine decarboxylase 2 OS=Xenopus laevis GN=odc... [more]
DCOR_NEUCR1.163e-2349.19Ornithine decarboxylase OS=Neurospora crassa GN=sp... [more]
DCOR2_DROME1.984e-2340.37Ornithine decarboxylase 2 OS=Drosophila melanogast... [more]
DCOR_CANAL2.591e-2350.00Ornithine decarboxylase OS=Candida albicans GN=SPE... [more]
DCOR_CAEEL1.679e-2248.80Ornithine decarboxylase OS=Caenorhabditis elegans ... [more]
DCOR_CRIGR8.334e-2242.48Ornithine decarboxylase OS=Cricetulus griseus GN=O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-391 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509883 ID=CF509883; Name=CF509883; organism=Citrus sinensis; type=EST; length=488bp
GGCACTTGCAGCTCTTGGCTCAAACTTTGACTGTGGAAGCCGATCCGAGA
TTGAAGCTGTTTTGTTACTAGGTGTTTCACCGGATCGTATCATTTACGCA
AACCCGTGTAAGCCTGTATCTCACATCAAGTATGCTGCGAGTGTTGGCGT
CAACTTGACAACCGTTGACTCAGTAGAGGAGCTCGACAAGATTCGGAACT
GGCATCCGAAATCTGATTTATTGATCAGGATCAAATCCCCGGATGATAGC
GGAGCGAAGTATCCGTTGGATTCCAAATATGGCGCTGGTCATCATCCTCA
GGAAATTATGCCTCTTCTCAAAGCCGCTGAAGCTTCAGGGCTCTCTGTAG
TTGGTGTATCATTCCACGTTGGAAGCGAAGCTACAAACTTTGCTGCATTT
CGCGGAGCCATAGCAGCGGCTAAAGCAGTCTTTGACACAGCCGCTCGCAC
GAGTAACAACAAAATGCGTGTACTAGATATCGGCGGCG
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