CF509883
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_RAT (Ornithine decarboxylase OS=Rattus norvegicus GN=Odc1 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 4.270e-26 Identity = 73/161 (45.34%), Postives = 93/161 (57.76%), Query Frame = 2 Query: 5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487 LAA+G+ FDC S++EI+ V LGV P+RIIYANPCK VS IKYAAS GV + T DS EL K+ HPK+ L++RI + DDS A L K+GA + LL+ A+ + V+GVSFHVGS D + M +LDIGG Sbjct: 80 LAAIGTGFDCASKTEIQLVQGLGVPPERIIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRI-ATDDSKAVCRLSVKFGATLKTSRL--LLERAKELNIDVIGVSFHVGSGCTDPETFVQAVSDARCVFDMGTEVGFS-MYLLDIGG 236
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR1_XENLA (Ornithine decarboxylase 1 OS=Xenopus laevis GN=odc1-A PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 4.270e-26 Identity = 72/161 (44.72%), Postives = 92/161 (57.14%), Query Frame = 2 Query: 5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487 L+ LG+ FDC S++EI+ V +GVSP+RIIYANPCK VS IKYAAS GV T DS EL K+ HP + L++RI + DDS A L K+GA + LL+ A+ + ++GVSFHVGS D A N M +LDIGG Sbjct: 80 LSILGAGFDCASKTEIQLVQSIGVSPERIIYANPCKQVSQIKYAASCGVEKMTFDSEVELMKVARNHPNAKLVLRI-ATDDSKAVCRLSVKFGATLKTSRL--LLERAKELNVDIIGVSFHVGSGCTDPQTYVQAVSDARCVFDMGAELGFN-MHLLDIGG 236
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_MUSPA (Ornithine decarboxylase OS=Mus pahari GN=Odc1 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 7.284e-26 Identity = 73/161 (45.34%), Postives = 92/161 (57.14%), Query Frame = 2 Query: 5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487 LAA G+ FDC S++EI+ V LGV P+RIIYANPCK VS IKYAAS GV + T DS EL K+ HPK+ L++RI + DDS A L K+GA + LL+ A+ + V+GVSFHVGS D + M +LDIGG Sbjct: 80 LAATGTGFDCASKTEIQLVQGLGVPPERIIYANPCKQVSQIKYAASSGVQMMTFDSEIELMKVARAHPKAKLVLRI-ATDDSKAVCRLSVKFGATLKTSRL--LLERAKELNIDVIGVSFHVGSGCTDPETFVQAVSDARCVFDMGTEVGFS-MYLLDIGG 236
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_MOUSE (Ornithine decarboxylase OS=Mus musculus GN=Odc1 PE=1 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 9.514e-26 Identity = 72/161 (44.72%), Postives = 93/161 (57.76%), Query Frame = 2 Query: 5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487 LAA+G+ FDC S++EI+ V LGV +R+IYANPCK VS IKYAAS GV + T DS EL K+ HPK+ L++RI + DDS A L K+GA + LL+ A+ + V+GVSFHVGS D A + M +LDIGG Sbjct: 80 LAAIGTGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRI-ATDDSKAVCRLSVKFGATLKTSRL--LLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFS-MHLLDIGG 236
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR2_XENLA (Ornithine decarboxylase 2 OS=Xenopus laevis GN=odc1-B PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 3.060e-24 Identity = 68/161 (42.24%), Postives = 93/161 (57.76%), Query Frame = 2 Query: 5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487 LA LG+ FDC S++EIE V +GV+P+RIIYANPCK +S IKYAA GV + T D+ EL K+ HP + +++RI + DDS + L K+GA + LL+ A+ + V+GVSFHVGS + A+ KM +LDIGG Sbjct: 79 LAELGAGFDCASKTEIELVQDVGVAPERIIYANPCKQISQIKYAAKNGVQMMTFDNEVELSKVSRSHPNARMVLRI-ATDDSKSSARLSVKFGA--PLKSCRRLLEMAKNLSVDVIGVSFHVGSGCTDSKAYTQAISDARLVFEMASE-FGYKMWLLDIGG 235
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_NEUCR (Ornithine decarboxylase OS=Neurospora crassa GN=spe-1 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.163e-23 Identity = 61/124 (49.19%), Postives = 79/124 (63.71%), Query Frame = 2 Query: 5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGS 376 LAALG+ FDC S++EIE VL +GV P RIIYA PCK S+++Y A GV T D+ +EL KI +P ++L +RI + DDS + K+GA + LL A GL+VVGVSFHVGS Sbjct: 125 LAALGTGFDCASKAEIEQVLRMGVDPSRIIYAQPCKTNSYLRYVAQQGVRQMTFDNADELRKIARLYPDAELFLRILT-DDSSSLCRFSMKFGASLDSTD--GLLGLARQLGLNVVGVSFHVGS 245
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR2_DROME (Ornithine decarboxylase 2 OS=Drosophila melanogaster GN=Odc2 PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 1.984e-23 Identity = 65/161 (40.37%), Postives = 90/161 (55.90%), Query Frame = 2 Query: 5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487 LA LG+ FDC S++E++ VL LGVSP+RII+A+PC+P SH++YA V TVD+ E+ K+R +P S+L++R KS + A PL KYG + L+ A+A GL V G SFHVGS +KM +LD+GG Sbjct: 73 LADLGTGFDCASKNELKLVLGLGVSPERIIFAHPCRPASHLRYAKEQQVVNGTVDNEYEIYKLRKHYPDSNLIVRFKS-EAKKALCPLGDKYGCDAE-ADAAALMLLAKALGLKVTGTSFHVGSGCSEVEAYDRAIEKAENIF-KVGEMIGHKMELLDVGG 230
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_CANAL (Ornithine decarboxylase OS=Candida albicans GN=SPE1 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 2.591e-23 Identity = 63/126 (50.00%), Postives = 85/126 (67.46%), Query Frame = 2 Query: 5 LAALGSNFDCGSRSEIEAVLLLGV--SPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGS 376 L+ LG NFDC S++EI+ VL LG+ + +RIIYANPCK S I++AA VNLTTVD+V EL K+ +HP +LIR+ + DDS A+ L +K+G + I +L A+ GL V GV+FHVGS Sbjct: 117 LSELGVNFDCASKNEIDLVLSLGIHQAHERIIYANPCKTNSFIRHAADENVNLTTVDNVHELYKLAKFHPHCKILIRLIT-DDSTAQCQLSTKFGCDLN-TAIGEILPKAKELGLQVHGVAFHVGS 240
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_CAEEL (Ornithine decarboxylase OS=Caenorhabditis elegans GN=odc-1 PE=2 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 1.679e-22 Identity = 61/125 (48.80%), Postives = 80/125 (64.00%), Query Frame = 2 Query: 5 LAALGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMP-LLKAAEASGLSVVGVSFHVGS 376 LA+LG FDC S+ EI+ V+ GVS +RIIYANPCK S I +A V + T D+ EEL KI HP +++++RI + D A PL+ K+GA P P LLK A G++VVG+SFHVGS Sbjct: 82 LASLGCGFDCASKDEIDIVMGTGVSAERIIYANPCKTRSFIAHAMDRDVKMMTFDNPEELLKIAKLHPNAEMILRI-AVSDPTATCPLNLKFGA--DPIIAAPQLLKTASEEGINVVGISFHVGS 203
BLAST of CF509883 vs. ExPASy Swiss-Prot
Match: DCOR_CRIGR (Ornithine decarboxylase OS=Cricetulus griseus GN=ODC1 PE=2 SV=3) HSP 1 Score: 102.834 bits (255), Expect = 8.334e-22 Identity = 65/153 (42.48%), Postives = 82/153 (53.59%), Query Frame = 2 Query: 29 DCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLKAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNNKMRVLDIGG 487 DC S++EI+ V LGV P+R+IYANPCK VS IKYAAS GV + T DS EL K+ HPK L+ + DDS A L K+GA + LL+ A+ + V+GVSFHVGS D + M +LDIGG Sbjct: 84 DCASKTEIQLVQGLGVPPERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKVTKLVLRIATDDSKAVCRLSVKFGATLRTSRL--LLERAKELNIDVIGVSFHVGSGCTDPETFVQALSDARCVFDMGTEVGFS-MYLLDIGG 233 The following BLAST results are available for this feature:
BLAST of CF509883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >CF509883 ID=CF509883; Name=CF509883; organism=Citrus sinensis; type=EST; length=488bpback to top |