CF509896

Overview
NameCF509896
Unique NameCF509896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509896 vs. ExPASy Swiss-Prot
Match: API9_SOLTU (Aspartic protease inhibitor 9 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 55/184 (29.89%), Postives = 85/184 (46.20%), Query Frame = 1
Query:   76 EPVFDIIGNKVKSTLEYKLIPVLDGAGGFSTHLG----TNGQCPLDVIQLSSP-SERGDNLRLLPYDNYKIVKVSTDVNLRFPVKVSVKPCNEEPLWKVDS----YDDPLIVTGGIEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPS---VCLSCPRR--CNKIGVSSKDGVRRLALVGDD 585
            +PV D  G ++     Y++I +  GA G   +LG    ++  CP  V + +S     G  +R +P           ++    P   +VK C    +WKV +    +   L+ TGG  G        ++FKI K  NF Y    N++ CP    +CL CP    C K+GV  ++G RRLALV ++
Sbjct:    6 KPVLDTNGKELNPNSSYRIISIGAGALGGDVYLGKSPNSDAPCPDGVFRYNSDVGPSGTPVRFIPLSGGIFEDQLLNIQFNIP---TVKLCVSYTIWKVGNLNAYFRTMLLETGGTIGQADN----SYFKIVKLSNFGY----NLLSCPFTSIICLRCPEDQFCAKVGVVIQNGKRRLALVNEN 178          
BLAST of CF509896 vs. ExPASy Swiss-Prot
Match: API2_SOLTU (Aspartic protease inhibitor 2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 58/194 (29.90%), Postives = 94/194 (48.45%), Query Frame = 1
Query:   46 QPLLGISSNS---EPVFDIIGNKVKSTLEYKLIPVLDGAGGFSTHLG----TNGQCPLDVIQLSSP-SERGDNLRLLPYDNYKIVKVSTDVNLRFPVKVSVKPCNEEPLWKVDS----YDDPLIVTGGIEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSC--PRRCNKIGVSSKDGVRRLALVGDD 585
            Q L+ + S S   +PV D  G ++     Y++I +  GA G   +LG    ++G CP  V + +S     G  +R +P      +     +N++F +  +VK C    +WKV +    +   L+ TGG  G   +    ++FKI K  NF Y  +Y  +  P +C  C     C K+GV  ++G RRLALV ++
Sbjct:   25 QNLIDLPSESPLPKPVLDTNGKELNPNSSYRIISIGRGALGGDVYLGKSPNSDGPCPDGVFRYNSDVGPSGTFVRFIPLSGG--IFEDQLLNIQFNI-ATVKLCVSYTIWKVGNLNAYFRTMLLETGGTIGQADS----SYFKIVKLSNFGYNLLYCPITPPFLCPFCRDDNFCAKVGVVIQNGKRRLALVNEN 211          
The following BLAST results are available for this feature:
BLAST of CF509896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
API9_SOLTU3.703e-1129.89Aspartic protease inhibitor 9 OS=Solanum tuberosum... [more]
API2_SOLTU4.837e-1129.90Aspartic protease inhibitor 2 OS=Solanum tuberosum... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-406 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-82_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509896 ID=CF509896; Name=CF509896; organism=Citrus sinensis; type=EST; length=600bp
TCATTGATAACAACACTCTCCTTCCTTATCCTTACCTTGGCCACGCAGCC
TCTATTGGGCATCTCATCAAACTCTGAACCTGTCTTTGATATCATTGGCA
ACAAGGTCAAATCCACCCTCGAGTATAAACTTATCCCAGTCCTAGATGGC
GCCGGTGGATTCAGCACACACCTAGGCACAAATGGACAGTGTCCCTTGGA
CGTTATCCAATTAAGTTCTCCTAGCGAAAGGGGAGATAATTTAAGATTAC
TTCCGTACGACAATTACAAAATTGTCAAGGTATCCACTGATGTCAACCTG
AGATTCCCCGTAAAAGTTTCTGTTAAGCCCTGTAATGAAGAACCATTGTG
GAAAGTTGATAGCTATGACGATCCATTAATTGTAACCGGCGGAATTGAGG
GCCACCCAGGAGCTGAAACGTTGCTAAATTGGTTTAAGATTGAGAAAGCT
GGAAATTTTTCATATGGGGGTGTATACAATATTGTCCATTGTCCGAGTGT
CTGTCTTTCTTGTCCTAGACGCTGCAACAAAATTGGCGTTTCTTCTAAGG
ATGGCGTTCGACGTCTGGCTCTAGTTGGTGATGATGAACCGGCTTTGAAT
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