CF509918

Overview
NameCF509918
Unique NameCF509918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 2.605e-72
Identity = 139/211 (65.88%), Postives = 169/211 (80.09%), Query Frame = 2
Query:   26 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP----SNIKEGQTIVVGGASEA-NTKKPCCSS 643
            DY+FKVVLIGDS VGKS LL+RF RNEF L+SK+TIGVEF TRTL ++ RT+KAQIWDTAGQERYRA+TSAYYRGA+GA+LVYD+TK  +F++V+RWL+ELR HAD NIVIM+IGNK+DL  LR V TEDA+ +AERE L F+ETSALE+ NVE AF T+L+EIYRI+SKK+L + E       S++ +G  IVV G   A  TK  CC S
Sbjct:   16 DYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 226          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.880e-71
Identity = 133/207 (64.25%), Postives = 170/207 (82.13%), Query Frame = 2
Query:   17 E*YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 637
            E YDYL+K+VLIGDSGVGKSNLLSRFTRNEF LE+KSTIGVEFATRT+Q EG+TIKAQ+WDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+++V RW+ ELR++AD NI IM++GNK+DL+HLR V+T++A+ ++E+  L+FIETSAL++ NVE AFQ IL++IY I+S+ S S+G P  +     +TI++   SE    K  C
Sbjct:    8 EEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSRPSHSTG-PQTTIDSNTETIILPTTSEPPAAKSGC 213          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.431e-70
Identity = 133/212 (62.74%), Postives = 168/212 (79.25%), Query Frame = 2
Query:   26 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL----SSGEPAPSNIKEGQTIVVGGASEANTKK-PCCSSS 646
            DY+FKVVLIGDS VGKS +L+RF RNEF L+SKSTIGVEF TRTL ++ +T+KAQIWDTAGQERYRA+TSAYYRGA+GA+LVYD+TK  TF+++ RWL+ELR+HAD NIVI++IGNK DL + R V TEDA+ +AE+EGL F+ETSALEA NVE AF T+L+EIY I++KKSL    S G    +++   + I+ G A E   K+  CC +S
Sbjct:   15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQGNGNSASLSGQKIIIPGPAQEIPAKRNMCCQAS 226          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.210e-69
Identity = 128/210 (60.95%), Postives = 169/210 (80.48%), Query Frame = 2
Query:   26 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPA----PSNIKEGQTIVVGGASEANTKKPCCSS 643
            DY+FKVVLIGDS VGKS +L+RF RNEF L+SK+TIGVEF TRTL ++ +++KAQIWDTAGQERYRA+TSAYYRGA+GA+LVYD+TK  TF+++ RWL+ELR HAD NIVIM+IGNKTDL+  RAV TEDA+ +A++EGL F+ETSA+EA N+E AF T+L+EI+ I++KK+L++ +      P+++   + +V G       KK CCSS
Sbjct:   13 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPASLTGKKILVPGPGQVIPEKKACCSS 222          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 3.892e-68
Identity = 126/210 (60.00%), Postives = 167/210 (79.52%), Query Frame = 2
Query:   26 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE----PAPSNIKEGQTIVVGGASEANTKKPCCSS 643
            DY+FKVVLIGDS VGK+ +L+RF RNEF L+SK+TIGVEF TRTL ++ +++KAQIWDTAGQERYRA+TSAYYRGA+GA+LVYD+TK  TF+++ RWL+ELR HAD NIVIM+ GNKTDL+  RAV TEDA+ +A++EGL F+ETSA+EA  +E AF T+L+EI+ I++KK+L++ E      P+++   + +V G       KK CCSS
Sbjct:   13 DYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNSNPASLTGKKILVPGPGQVIPGKKACCSS 222          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 245.358 bits (625), Expect = 1.999e-64
Identity = 115/187 (61.50%), Postives = 155/187 (82.89%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEG 583
            YD LFK+VLIGDSGVGKSNLLSRFT+NEF ++SKSTIGVEFATRTL+++G+ IKAQIWDTAGQERYRAITSAYYRGA+GAL+VYD++K +++EN + WL ELR++AD N+ + +IGNK+DL HLRAV TE+++++A+   L F ETSAL + NV+KAF+ +++ IY+ +SK  +  G+ + +    G
Sbjct:   10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANG 196          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 2.887e-63
Identity = 121/213 (56.81%), Postives = 163/213 (76.53%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNI-----KEGQTIVVGGASEANTKKP---CC 637
            YDYLFK+VLIGDSGVGKSNLLSRFT +EF +ESKSTIGVEFATRT++VE + IKAQIWDTAGQERYRAITSAYYRGA+GAL+VYD++K +++EN + WL ELR++AD N+ + +IGNK+DL HLRAV T++A+++A    + F ETSAL + NV+KAF+ ++  I++++SK  +       +N+      +G TI +  A + + KK    CC
Sbjct:   10 YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSGSGTNNMGSNGAPKGPTISLTPAPKEDKKKKSSNCC 222          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.192e-62
Identity = 122/212 (57.55%), Postives = 157/212 (74.06%), Query Frame = 2
Query:    8 RPDE*YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 643
            R DE Y+++FKVVLIG+SGVGK+NLLSRFTRNEF  +S++TIGVEF+TRT+ +    +KAQIWDTAG ERYRAITSAYYRGA+GALLV+D+TK  T+  V RWLKEL DHA++ IV+M++GNK+DL   R V TE+A  +AE  GL F+ETSAL++ NVE AFQT+L EI+  +SK+  +S   +   +   Q     G  E   K+ CC S
Sbjct:    4 RTDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQKQNSTRTSAITLGNAQAGQDPGPGE---KRACCIS 212          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.529e-61
Identity = 120/212 (56.60%), Postives = 157/212 (74.06%), Query Frame = 2
Query:    8 RPDE*YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 643
            R +E Y+++FKVVLIG+SGVGK+NLLSRFTRNEF  +S++TIGVEF+TRT+ +    IKAQIWDTAG ERYRAITSAYYRGA+GALLV+D+TK  T+  V RWLKEL DHA++ IV+M++GNK+DL   R V TE+A+ +AE  GL F+ETSAL++ NVE AF+T+L EI+  +SK+  ++       +  G      G  E   K+ CC S
Sbjct:    4 RAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNNARTNAVTLGSGPAGQELGPGE---KRACCIS 212          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.529e-61
Identity = 112/210 (53.33%), Postives = 163/210 (77.62%), Query Frame = 2
Query:   26 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVV---GGASEANTKKPCCSSS 646
            +YLFK+V+IGDS VGKSNLLSR+ RNEF   SK+TIGVEF T+++++EG+ +KAQIWDTAGQER+RA+TSAYYRGA+GAL+VYD+T+ TTFE+V RWL EL+ H+D+ +  M++GNK DL+++RAV+ E+ ++ AE EGL F+ETSAL++ NV+ AF+ ++ +IY  +S+K L+S +     +   +  +V     AS+ ++   CCSS+
Sbjct:   10 EYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNS-DTYKDELTVNRVSLVKDDNSASKQSSGFSCCSST 218          
The following BLAST results are available for this feature:
BLAST of CF509918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RGP1_ORYSJ2.605e-7265.88Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11A_DICDI2.880e-7164.25Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RB11A_LOTJA5.431e-7062.74Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11D_TOBAC1.210e-6960.95Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11C_TOBAC3.892e-6860.00Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
YPT31_YEAST1.999e-6461.50GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
YPT32_YEAST2.887e-6356.81GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RAB25_MOUSE3.192e-6257.55Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB25_BOVIN3.529e-6156.60Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
ARA1_ARATH3.529e-6153.33Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-428 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509918 ID=CF509918; Name=CF509918; organism=Citrus sinensis; type=EST; length=660bp
GGCGAGGAGACCGGACGAGTAATACGATTACTTGTTCAAAGTGGTATTAA
TCGGCGATTCGGGAGTCGGGAAGTCGAACTTACTCTCCCGATTTACTCGT
AACGAGTTCTGTTTGGAGTCCAAATCCACTATTGGCGTCGAATTCGCTAC
ACGCACTCTTCAAGTTGAAGGAAGGACAATAAAAGCTCAGATATGGGACA
CTGCAGGTCAGGAGCGATACAGAGCAATAACCAGTGCCTATTATAGAGGT
GCACTCGGAGCTCTTTTAGTTTACGATGTGACAAAACCAACAACATTTGA
AAACGTGAGCCGGTGGCTGAAGGAGCTGAGGGACCACGCAGACTCCAACA
TCGTGATCATGATGATTGGAAATAAGACTGATCTGAAACACCTCCGAGCT
GTTGCAACAGAGGACGCCCAAAGCTATGCTGAGAGAGAAGGGCTTTCCTT
CATTGAAACCTCAGCTCTTGAAGCAATAAATGTCGAGAAGGCTTTCCAGA
CAATTCTCTCAGAGATATACCGGATAATCAGCAAGAAGTCCCTCTCTTCA
GGGGAGCCAGCTCCTTCAAACATCAAAGAAGGACAGACTATTGTAGTAGG
AGGGGCATCAGAGGCCAACACAAAGAAACCTTGTTGCTCTTCATCCTAAA
GATGGGGGCT
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