CF509918

Overview
NameCF509918
Unique NameCF509918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 7.861e-61
Identity = 119/210 (56.67%), Postives = 156/210 (74.29%), Query Frame = 2
Query:   14 DE*YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 643
            +E Y+++FKVVLIG+SGVGK+NLLSRFTRNEF  +S++TIGVEF+TRT+ +    +KAQIWDTAG ERYRAITSAYYRGA+GALLV+D+TK  T+  V RWLKEL DHA++ IV+M++GNK+DL   R V TE+A+ +AE  GL F+ETSAL++ NVE AF+T+L EI+  +SK+  +S       +   Q     G  E   K+ CC S
Sbjct:    6 EEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNSIRTNAITLGSAQAGQEPGPGE---KRACCIS 212          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.751e-60
Identity = 112/205 (54.63%), Postives = 155/205 (75.61%), Query Frame = 2
Query:   26 DYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCS 640
            +YLFK+V+IGDS VGKSNLL+R+ RNEF   SK+TIGVEF T+++ ++G+ +KAQIWDTAGQER+RA+TSAYYRGA+GAL+VYD+T+ +TFENV RWL EL  H+D+ +  M+IGNK DL+ +RAV+ E+ +S AE EGL F+ETSAL++ NV+ AF+ ++ EIY  IS+K L+S +     +   +  +V   +E      CCS
Sbjct:   10 EYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNS-DSYKEELTVNRVSLVKNENEGTKTFSCCS 213          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.987e-60
Identity = 119/208 (57.21%), Postives = 157/208 (75.48%), Query Frame = 2
Query:   14 DE*YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 637
            +E Y+++FKVVLIG+SGVGK+NLLSRFTRNEF  +S++TIGVEF+TRT+ +    +KAQIWDTAG ERYRAITSAYYRGA+GALLV+D+TK  T+  V RWLKEL DHA++ IV+M++GNK+DL   R V TE+A+ +AE  GL F+ETSAL++ NVE AF+T+L EI+  +SK+  +S  P  + I  G +   G       K+ CC
Sbjct:    6 EEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQIQNS--PRSNAIALG-SAQAGQEPGPGQKRACC 210          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.887e-57
Identity = 99/175 (56.57%), Postives = 146/175 (83.43%), Query Frame = 2
Query:   14 DE*YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 538
            +E  +YLFK+V+IGDS VGKSNLL+RFTRNEF  ++K+TIGV+F T++++++ +TI AQ WDTAGQER+RA+TS YYRGA+GA++VYD+T   +F+NV+RWL ELR+ A+ +I+IMM+GNK+DL+  R V T++AQ++AE   +SF+ETSAL + NV ++F+ +L++IY ++S K
Sbjct:    4 EEEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSK 178          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.065e-49
Identity = 90/171 (52.63%), Postives = 131/171 (76.61%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 535
            YDYL K+V+IGDSGVGKSNLLSR+ +NEF +   STIGVEF+T+TL+++ + IK Q+WDTAGQE+Y +IT +YY+GA+GAL+VY++    +F N+ +WLK+ R++A  +  IM++GNK+DLK  R V+T + + +AE+  + FIETSAL++ NVE AF  + + IY  + K
Sbjct:    8 YDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIYYSLFK 178          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.817e-49
Identity = 103/218 (47.25%), Postives = 138/218 (63.30%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS-------------KKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 637
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R HA+ N+ IM+IGNK DL H RAV TE+ + +A+  GL F+ETSA  A NVE+AF     EIY+ I              K     G   P  +K G+    GGA+++++   CC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVKPGE----GGAAKSSS---CC 213          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.426e-48
Identity = 101/218 (46.33%), Postives = 132/218 (60.55%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS-------------KKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 637
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R HA+ N+ IM+IGNK DL H RAV TE+ + +A+  GL F+ETSA  A NVE+AF     EIY+ I              K    +G   P   K G+        +A     CC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGAGNAGPQAAKPGE-------GDARKSSSCC 213          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.426e-48
Identity = 99/207 (47.83%), Postives = 137/207 (66.18%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 643
            YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++ +G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +A  N+  +++GNK+DL   + VATE A+++A+  G+ F+ETSA  A NV++AF  + + I      K   + +PA +N +     + G     N K  CCSS
Sbjct:    5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASI------KDRMASQPAAANARPATVQIRG--QPVNQKTSCCSS 203          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.632e-48
Identity = 100/205 (48.78%), Postives = 137/205 (66.83%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 637
            YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +A  N+  +++GNK+DL   R V+T+ A+ +AE  G+ F+ETSA  A NVEKAF  + ++I     KK +++   AP   K G  +  G    +N    CC
Sbjct:    5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI-----KKRMANAPVAP---KAGVKLTPGQQVPSNGGSKCC 201          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.968e-48
Identity = 96/208 (46.15%), Postives = 135/208 (64.90%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL-KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 643
            YDYL K++LIGDSGVGKS LL RF+   F     +TIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G LLVYDVT  ++F N+  W++ +  HA  N+  +++GNK D+ +  RAV T   Q+ A+  G+ F ETSA   +NVE+ F +I  +I + +S    +     P+ IK  QT    GA +A  K  CC +
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSD---TDSRAEPATIKISQTDQAAGAGQATQKSACCGT 216          
The following BLAST results are available for this feature:
BLAST of CF509918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_HUMAN7.861e-6156.67Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
ARA4_ARATH1.751e-6054.63Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RAB25_RABIT2.987e-6057.21Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RB11C_DICDI6.887e-5756.57Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RB11B_DICDI1.065e-4952.63Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
YPTC4_CHLRE1.817e-4947.25GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
YPTV4_VOLCA3.426e-4846.33GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTM2_MAIZE3.426e-4847.83GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
YPT1_PHYIN7.632e-4848.78Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
ARA3_ARATH9.968e-4846.15Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-428 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509918 ID=CF509918; Name=CF509918; organism=Citrus sinensis; type=EST; length=660bp
GGCGAGGAGACCGGACGAGTAATACGATTACTTGTTCAAAGTGGTATTAA
TCGGCGATTCGGGAGTCGGGAAGTCGAACTTACTCTCCCGATTTACTCGT
AACGAGTTCTGTTTGGAGTCCAAATCCACTATTGGCGTCGAATTCGCTAC
ACGCACTCTTCAAGTTGAAGGAAGGACAATAAAAGCTCAGATATGGGACA
CTGCAGGTCAGGAGCGATACAGAGCAATAACCAGTGCCTATTATAGAGGT
GCACTCGGAGCTCTTTTAGTTTACGATGTGACAAAACCAACAACATTTGA
AAACGTGAGCCGGTGGCTGAAGGAGCTGAGGGACCACGCAGACTCCAACA
TCGTGATCATGATGATTGGAAATAAGACTGATCTGAAACACCTCCGAGCT
GTTGCAACAGAGGACGCCCAAAGCTATGCTGAGAGAGAAGGGCTTTCCTT
CATTGAAACCTCAGCTCTTGAAGCAATAAATGTCGAGAAGGCTTTCCAGA
CAATTCTCTCAGAGATATACCGGATAATCAGCAAGAAGTCCCTCTCTTCA
GGGGAGCCAGCTCCTTCAAACATCAAAGAAGGACAGACTATTGTAGTAGG
AGGGGCATCAGAGGCCAACACAAAGAAACCTTGTTGCTCTTCATCCTAAA
GATGGGGGCT
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