CF509918

Overview
NameCF509918
Unique NameCF509918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.545e-45
Identity = 88/171 (51.46%), Postives = 123/171 (71.93%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 535
            Y +LFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++ + IK QIWDTAGQE +R+IT +YYRG+ GALLVYD+T+  TF +++ WLK+ R +A+SN+ I++IGNK+D++  RAV+ E+ + +A+  GL F+ETSA  A NVE+AF    S+IY  I K
Sbjct:    2 YSFLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQK 172          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.630e-45
Identity = 91/205 (44.39%), Postives = 139/205 (67.80%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 637
            YDYLFK++LIG+SGVGKS LL RF+ + +  +  STIGV+F  +T++++G+T+K QIWDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V  WL+E+  +A S ++ +++GNK DLK  R V  + A+ +A+   + F+ETSAL++ NVE AF T+  +I   +S+++L+         ++   + + G S  NT   CC
Sbjct:    5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE---TTQKKEDKGNVNLKGQSLTNTGGGCC 206          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 4.630e-45
Identity = 96/201 (47.76%), Postives = 132/201 (65.67%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 625
            YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+ +EI     KK +  G  A            GGA ++N K
Sbjct:    8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATA------------GGAEKSNVK 191          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 4.630e-45
Identity = 96/201 (47.76%), Postives = 132/201 (65.67%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 625
            YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+ +EI     KK +  G  A            GGA ++N K
Sbjct:    8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATA------------GGAEKSNVK 191          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 4.630e-45
Identity = 96/201 (47.76%), Postives = 132/201 (65.67%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 625
            YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+ +EI     KK +  G  A            GGA ++N K
Sbjct:    8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATA------------GGAEKSNVK 191          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 4.630e-45
Identity = 96/201 (47.76%), Postives = 132/201 (65.67%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 625
            YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+ +EI     KK +  G  A            GGA ++N K
Sbjct:    8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATA------------GGAEKSNVK 191          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.047e-45
Identity = 90/178 (50.56%), Postives = 126/178 (70.79%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 556
            YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +A  N+  +++GNK+DL   + V    A+ +A+  G+ F+ETSA  A NVE+AF T+ +EI + +   + S GE
Sbjct:    5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 6.047e-45
Identity = 96/201 (47.76%), Postives = 132/201 (65.67%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 625
            YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +A  N+  +++GNK DL   + V    A+ +A+  G+ F+ETSA  A NVE++F T+ +EI     KK +  G  A            GGA ++N K
Sbjct:    8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKRMGPGATA------------GGAEKSNVK 191          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.898e-45
Identity = 88/183 (48.09%), Postives = 126/183 (68.85%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSN 571
            YDYLFK++LIGDSGVGK+ +L RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA +++  M++GNK D+   R V+ E  +  A   G+ F+ETSA   INVE AF T+  +I   + KK L    P  SN
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKK-LEGNSPQGSN 186          
BLAST of CF509918 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.031e-44
Identity = 93/191 (48.69%), Postives = 131/191 (68.59%), Query Frame = 2
Query:   23 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIV 595
            YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++++G+ IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +A  N+  +++GNK+DL   + V    A+++A+  G+ F+ETSA  A NVE+AF T+ +EI      K+  + +P P+  K G  +V
Sbjct:    5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI------KNRMASQPIPT--KAGGPVV 187          
The following BLAST results are available for this feature:
BLAST of CF509918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_DICDI3.545e-4551.46Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
YPT1_YEAST4.630e-4544.39GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1A_RAT4.630e-4547.76Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE4.630e-4547.76Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN4.630e-4547.76Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA4.630e-4547.76Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB1B_PIG6.047e-4550.56Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RAB1A_PIG6.047e-4547.76Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB8A_BOVIN7.898e-4548.09Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
YPTC1_CHLRE1.031e-4448.69GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-428 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509918 ID=CF509918; Name=CF509918; organism=Citrus sinensis; type=EST; length=660bp
GGCGAGGAGACCGGACGAGTAATACGATTACTTGTTCAAAGTGGTATTAA
TCGGCGATTCGGGAGTCGGGAAGTCGAACTTACTCTCCCGATTTACTCGT
AACGAGTTCTGTTTGGAGTCCAAATCCACTATTGGCGTCGAATTCGCTAC
ACGCACTCTTCAAGTTGAAGGAAGGACAATAAAAGCTCAGATATGGGACA
CTGCAGGTCAGGAGCGATACAGAGCAATAACCAGTGCCTATTATAGAGGT
GCACTCGGAGCTCTTTTAGTTTACGATGTGACAAAACCAACAACATTTGA
AAACGTGAGCCGGTGGCTGAAGGAGCTGAGGGACCACGCAGACTCCAACA
TCGTGATCATGATGATTGGAAATAAGACTGATCTGAAACACCTCCGAGCT
GTTGCAACAGAGGACGCCCAAAGCTATGCTGAGAGAGAAGGGCTTTCCTT
CATTGAAACCTCAGCTCTTGAAGCAATAAATGTCGAGAAGGCTTTCCAGA
CAATTCTCTCAGAGATATACCGGATAATCAGCAAGAAGTCCCTCTCTTCA
GGGGAGCCAGCTCCTTCAAACATCAAAGAAGGACAGACTATTGTAGTAGG
AGGGGCATCAGAGGCCAACACAAAGAAACCTTGTTGCTCTTCATCCTAAA
GATGGGGGCT
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