CF509988

Overview
NameCF509988
Unique NameCF509988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length416
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.079e-25
Identity = 58/109 (53.21%), Postives = 73/109 (66.97%), Query Frame = 3
Query:   63 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLF------GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            K  +GINGFGRIGRLV R A+++D V +VAVNDPFIS DYM Y+F+YDS HG++K     VK E   L        +  + V+  ++P EI W   GA+YVVESTGVFT
Sbjct:    3 KPTVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGT---VKHEGDYLIVANEGKSQHKIKVYNSKDPAEIQWGAAGADYVVESTGVFT 108          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.327e-25
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+GINGFG IGRLV R A     V++VA+NDPFI  DYM YMFKYDS HG++K   +K ++ K L+  ++ + VF  R+P  I W   GA YVVESTGVFT
Sbjct:    2 VKVGINGFGCIGRLVTRAAFDSGKVQVVAINDPFIDLDYMVYMFKYDSTHGRFK-GTVKAENGK-LIINDQVITVFQERDPSSIKWGDAGAVYVVESTGVFT 101          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.327e-25
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+GINGFGRIGR+V R A++  ++E+VAVNDPFI  +Y  YM KYDS HG +K  E+K KD   L+   K V     R+P  IPW  +GAEY+VESTGVFT
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEIEVVAVNDPFIDPEYAAYMLKYDSSHGVFK-GEIK-KDADGLIVNGKKVKFHTERDPSAIPWKASGAEYIVESTGVFT 102          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 112.849 bits (281), Expect = 5.327e-25
Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+G+NGFGRIGRLV R A     V++VA+NDPFI   YM YMF+YDS HG++ +  +K ++ K ++ G K + +F  R+P  I W   GAEYVVESTGVFT
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFT 101          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.957e-25
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 3
Query:   63 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            ++ IGINGFGRIGR+V R ++  +   +VA+NDPFI  +YM YM KYDS HG + + ++  KD K ++ G K +AVF  ++P  IPW + GA YVVESTGVFT
Sbjct:    3 QVNIGINGFGRIGRIVFRNSVVHNTANVVAINDPFIDLEYMVYMLKYDSTHGVF-NGDISTKDGKLIVNG-KSIAVFAEKDPSNIPWGQAGAHYVVESTGVFT 103          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.957e-25
Identity = 57/102 (55.88%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+GINGFGRIGR+V R A++  DVE+VAVNDPFI   Y  YM KYDS HG +K   ++V     ++ G K V  +  R+P  IPW  TGAEY+VESTGVFT
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIEPKYAEYMLKYDSTHGVFK-GTIQVSGSDLIVNG-KTVKFYTERDPSAIPWKDTGAEYIVESTGVFT 102          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.957e-25
Identity = 54/102 (52.94%), Postives = 73/102 (71.57%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+GINGFGRIGR+V R A++ DD+ +VAVNDPFI   Y  YM +YD+ HG +K   ++V D   L+   K V  +  R+P  IPW++TGA+Y+VESTGVFT
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHDDIHIVAVNDPFIEPKYAAYMLRYDTTHGNFK-GTIEV-DGADLVVNGKKVKFYTERDPAAIPWSETGADYIVESTGVFT 102          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.187e-24
Identity = 59/101 (58.42%), Postives = 69/101 (68.32%), Query Frame = 3
Query:   69 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            KIGINGFGRIGRLV R AL +   E+VAVNDPFI  +YM Y+FKYDS HG++K       D   L+   K + VF  R+P  I WA  GAEY+VESTGVFT
Sbjct:    3 KIGINGFGRIGRLVLRAALDKG-AEVVAVNDPFIDVNYMVYLFKYDSTHGRFKGT--VAADGGFLVVNGKKITVFCERDPTNINWASAGAEYIVESTGVFT 100          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.187e-24
Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 3
Query:   66 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            +K+GINGFGRIGR+V R A++  +V +VAVNDPFI T Y  YM KYDS HGQ+K   + V      + G K V  +  R+P  IPW K G EYVVESTGVFT
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHGEVNVVAVNDPFIETHYAAYMLKYDSTHGQFK-GTIDVNSNGLTVNG-KAVTFYQERDPASIPWGKHGVEYVVESTGVFT 102          
BLAST of CF509988 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.550e-24
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 3
Query:   69 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT 371
            K+GINGFGRIGR+V R A++   V++VAVNDPFI T Y  YM KYDS HGQ+K   ++  DE  ++ G+K +     R+P  IPW + GAEY+VESTGVFT
Sbjct:    4 KVGINGFGRIGRIVFRNAIEAGTVDVVAVNDPFIETHYAAYMLKYDSQHGQFK-GTIETYDEGLIVNGKK-IRFHTERDPANIPWGQDGAEYIVESTGVFT 102          
The following BLAST results are available for this feature:
BLAST of CF509988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
G3P2_CAEBR4.079e-2553.21Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_XENLA5.327e-2554.90Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_CLAPU5.327e-2555.88Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3P_BOVIN5.327e-2552.94Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P_USTMA6.957e-2552.43Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_PODAN6.957e-2555.88Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_NEUCR6.957e-2552.94Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P_GLOMM1.187e-2458.42Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_AJECA1.187e-2455.88Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P_EMENI1.550e-2455.45Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-502 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509988 ID=CF509988; Name=CF509988; organism=Citrus sinensis; type=EST; length=416bp
GCAGCGTTAAACAAACCTTCACTACTTTCTCATTTTCGATAATATCAATG
GCCGGAGACAAGAAGATCAAGATCGGAATCAACGGTTTCGGAAGGATCGG
CCGTTTGGTTGCGAGAGTCGCACTCCAGAGGGATGATGTGGAGCTGGTGG
CTGTCAACGATCCTTTCATCTCCACTGATTACATGACATACATGTTTAAG
TACGATAGTGTTCACGGTCAGTGGAAGCACAACGAGTTGAAGGTCAAGGA
CGAGAAGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCGGATTCA
GGAACCCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTATGTTGTG
GAATCAACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCACTTGAA
GGGTGGTGCCAAGAAG
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