CF509998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP13_HORSE (Collagenase 3 OS=Equus caballus GN=MMP13 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.202e-25 Identity = 79/170 (46.47%), Postives = 93/170 (54.71%), Query Frame = 1 Query: 10 RWPSNKRDLTYA---FLPDNQLT-DEVKNVFATAFDRWSEATSLTFTRTDVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 492 +WP K +LTY + PD LT EV+ F AF WS+ T L FTR +Y TADI I F T +HGD PFDGP G LAHAF P PN G H D DE W +L VA HE GH LGL HS A+M+P + +G L +DD+QGIQ LYG Sbjct: 113 KWP--KMNLTYRIVNYTPD--LTHSEVEKAFKKAFKVWSDVTPLNFTR--LYNGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFVLPDDDVQGIQYLYG 268
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP20_BOVIN (Matrix metalloproteinase-20 OS=Bos taurus GN=MMP20 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 5.488e-25 Identity = 69/175 (39.43%), Postives = 83/175 (47.43%), Query Frame = 1 Query: 1 GMPRWPSNKRDLTYAFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNG 513 G P+W N + + EV A WS A L F R + ADI I F TGDHGD PFDGP GTLAHAF+P G H D E W +L +VA HE GH LGL HS+ A+M+P+ L DD++GIQALYG F+G Sbjct: 111 GEPKWKKNTLTYRISKYTPSMTPAEVDRAMEMALRAWSSAVPLNFVRINA-GEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWT--------MGTNGFNLFTVAAHEFGHALGLAHSTDPSALMFPTYKYQNPYGFRLPKDDVKGIQALYGPRRAFSG 276
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP8_HUMAN (Neutrophil collagenase OS=Homo sapiens GN=MMP8 PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25 Identity = 74/176 (42.05%), Postives = 92/176 (52.27%), Query Frame = 1 Query: 1 GMPRWPSNKRDLTYA---FLPDNQLTD-EVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPN 504 G P+W + +LTY + P QL++ EV+ AF+ WS A+ L FTR ADI I F+ DHGD PFDGP G LAHAF P G H D +E W +L VA HE GH LGL HSS A+MYP+ + + L DDI GIQA+YG + N Sbjct: 104 GNPKW--ERTNLTYRIRNYTP--QLSEAEVERAIKDAFELWSVASPLIFTRIS-QGEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT--------NTSANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYGLSSN 266
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP1_HORSE (Interstitial collagenase OS=Equus caballus GN=MMP1 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24 Identity = 74/174 (42.53%), Postives = 87/174 (50.00%), Query Frame = 1 Query: 1 GMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 504 G PRW + LTY + PD D V AF WS + LTFT+ ADI I F GDH D PFDGP G LAHAF P G H D DE W +L VA HE GH LGL HS+ A+MYP+ + V+L+ DDI GIQA+YG + N Sbjct: 105 GNPRWENTH--LTYRIENYTPDLPRAD-VDQAIEKAFQLWSNVSPLTFTKVSE-GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPRIGGDAHFDEDETWT--------SNFRNYNLYRVAAHEFGHSLGLSHSTDIGALMYPNYFF-TGDVQLSQDDINGIQAIYGPSQN 265
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP13_BOVIN (Collagenase 3 OS=Bos taurus GN=MMP13 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24 Identity = 76/165 (46.06%), Postives = 90/165 (54.55%), Query Frame = 1 Query: 22 NKRDLTYA---FLPDNQLT-DEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 492 +K +LTY + PD LT EV+ F AF WS+ T L FTR TADI I F T +HGD PFDGP G LAHAF P PN G H D DE W +L VA HE GH LGL HS A+M+P + +G L +DD+QGIQ+LYG Sbjct: 114 SKMNLTYRIVNYTPD--LTHSEVEKAFRKAFKVWSDVTPLNFTRIH-NGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 267
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP1_BOVIN (Interstitial collagenase OS=Bos taurus GN=MMP1 PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.597e-24 Identity = 73/164 (44.51%), Postives = 84/164 (51.22%), Query Frame = 1 Query: 31 DLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 504 +LTY + PD D V AF WS T LTFT+ ADI I F GDH D PFDGP G LAHAF P G H D DE W +L VA HE GH LGL HS+ A+MYPS + S V+L+ DDI GIQA+YG + N Sbjct: 113 NLTYRIENYTPDLSRAD-VDQAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGAGIGGDAHFDDDEWWT--------SNFQDYNLYRVAAHEFGHSLGLAHSTDIGALMYPSYTF-SGDVQLSQDDIDGIQAIYGPSQN 265
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP20_HUMAN (Matrix metalloproteinase-20 OS=Homo sapiens GN=MMP20 PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 2.086e-24 Identity = 69/175 (39.43%), Postives = 83/175 (47.43%), Query Frame = 1 Query: 1 GMPRWPSNKRDLTYAFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNG 513 G P+W N + + + EV A WS A L+F R + ADI I F GDHGD PFDGP GTLAHAF+P G H D E W +L +VA HE GH LGL HS+ A+MYP+ L DD++GIQALYG F G Sbjct: 113 GEPKWKKNTLTYRISKYTPSMSSVEVDKAVEMALQAWSSAVPLSFVRINS-GEADIMISFENGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWT--------MGTNGFNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKGIQALYGPRKVFLG 278
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP13_MOUSE (Collagenase 3 OS=Mus musculus GN=Mmp13 PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.724e-24 Identity = 74/165 (44.85%), Postives = 91/165 (55.15%), Query Frame = 1 Query: 22 NKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 492 ++ +LTY + PD + EV+ F AF WS+ T L FTR +Y TADI I F T +HGD PFDGP G LAHAF P PN G H D DE W +L VA HE+GH LGL HS A+M+P + +G L +DD+QGIQ LYG Sbjct: 115 SQTNLTYRIVNYTPDMSHS-EVEKAFRKAFKVWSDVTPLNFTR--IYDGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGYNLFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQFLYG 268
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP13_RAT (Collagenase 3 (Fragment) OS=Rattus norvegicus GN=Mmp13 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.557e-24 Identity = 73/164 (44.51%), Postives = 90/164 (54.88%), Query Frame = 1 Query: 22 NKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 492 ++ +LTY + PD + EV+ F AF WS+ T L FTR TADI I F T +HGD PFDGP G LAHAF P PN G H D DE W +L VA HE+GH LGL HS A+M+P + +G L +DD+QGIQ+LYG Sbjct: 109 SQTNLTYRIVNYTPDISHS-EVEKAFRKAFKVWSDVTPLNFTRIHD-GTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNLGGDAHFDDDETWT--------SSSKGYNLFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 262
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP13_RABIT (Collagenase 3 OS=Oryctolagus cuniculus GN=MMP13 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.557e-24 Identity = 75/165 (45.45%), Postives = 90/165 (54.55%), Query Frame = 1 Query: 22 NKRDLTYA---FLPDNQLT-DEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 492 ++ +LTY + PD LT EV+ F AF WS+ T L FTR TADI I F T +HGD PFDGP G LAHAF P PN G H D DE W +L VA HE GH LGL HS A+M+P + +G L +DD+QGIQ+LYG Sbjct: 114 SQTNLTYRIVNYTPD--LTHSEVEKAFKKAFKVWSDVTPLNFTRIH-NGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 267 The following BLAST results are available for this feature:
BLAST of CF509998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CF509998 ID=CF509998; Name=CF509998; organism=Citrus sinensis; type=EST; length=582bpback to top |