CF509998

Overview
NameCF509998
Unique NameCF509998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP13_HORSE (Collagenase 3 OS=Equus caballus GN=MMP13 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.202e-25
Identity = 79/170 (46.47%), Postives = 93/170 (54.71%), Query Frame = 1
Query:   10 RWPSNKRDLTYA---FLPDNQLT-DEVKNVFATAFDRWSEATSLTFTRTDVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 492
            +WP  K +LTY    + PD  LT  EV+  F  AF  WS+ T L FTR  +Y  TADI I F T +HGD  PFDGP G LAHAF P PN  G  H D DE W               +L  VA HE GH LGL HS    A+M+P  + +G     L +DD+QGIQ LYG
Sbjct:  113 KWP--KMNLTYRIVNYTPD--LTHSEVEKAFKKAFKVWSDVTPLNFTR--LYNGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFVLPDDDVQGIQYLYG 268          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP20_BOVIN (Matrix metalloproteinase-20 OS=Bos taurus GN=MMP20 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.488e-25
Identity = 69/175 (39.43%), Postives = 83/175 (47.43%), Query Frame = 1
Query:    1 GMPRWPSNKRDLTYAFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNG 513
            G P+W  N      +    +    EV      A   WS A  L F R +    ADI I F TGDHGD  PFDGP GTLAHAF+P     G  H D  E W               +L +VA HE GH LGL HS+   A+M+P+          L  DD++GIQALYG    F+G
Sbjct:  111 GEPKWKKNTLTYRISKYTPSMTPAEVDRAMEMALRAWSSAVPLNFVRINA-GEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWT--------MGTNGFNLFTVAAHEFGHALGLAHSTDPSALMFPTYKYQNPYGFRLPKDDVKGIQALYGPRRAFSG 276          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP8_HUMAN (Neutrophil collagenase OS=Homo sapiens GN=MMP8 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 74/176 (42.05%), Postives = 92/176 (52.27%), Query Frame = 1
Query:    1 GMPRWPSNKRDLTYA---FLPDNQLTD-EVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPN 504
            G P+W   + +LTY    + P  QL++ EV+     AF+ WS A+ L FTR      ADI I F+  DHGD  PFDGP G LAHAF P     G  H D +E W               +L  VA HE GH LGL HSS   A+MYP+ +   +    L  DDI GIQA+YG + N
Sbjct:  104 GNPKW--ERTNLTYRIRNYTP--QLSEAEVERAIKDAFELWSVASPLIFTRIS-QGEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT--------NTSANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYGLSSN 266          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP1_HORSE (Interstitial collagenase OS=Equus caballus GN=MMP1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24
Identity = 74/174 (42.53%), Postives = 87/174 (50.00%), Query Frame = 1
Query:    1 GMPRWPSNKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 504
            G PRW +    LTY    + PD    D V      AF  WS  + LTFT+      ADI I F  GDH D  PFDGP G LAHAF P     G  H D DE W               +L  VA HE GH LGL HS+   A+MYP+    +  V+L+ DDI GIQA+YG + N
Sbjct:  105 GNPRWENTH--LTYRIENYTPDLPRAD-VDQAIEKAFQLWSNVSPLTFTKVSE-GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPRIGGDAHFDEDETWT--------SNFRNYNLYRVAAHEFGHSLGLSHSTDIGALMYPNYFF-TGDVQLSQDDINGIQAIYGPSQN 265          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP13_BOVIN (Collagenase 3 OS=Bos taurus GN=MMP13 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24
Identity = 76/165 (46.06%), Postives = 90/165 (54.55%), Query Frame = 1
Query:   22 NKRDLTYA---FLPDNQLT-DEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 492
            +K +LTY    + PD  LT  EV+  F  AF  WS+ T L FTR     TADI I F T +HGD  PFDGP G LAHAF P PN  G  H D DE W               +L  VA HE GH LGL HS    A+M+P  + +G     L +DD+QGIQ+LYG
Sbjct:  114 SKMNLTYRIVNYTPD--LTHSEVEKAFRKAFKVWSDVTPLNFTRIH-NGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 267          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP1_BOVIN (Interstitial collagenase OS=Bos taurus GN=MMP1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.597e-24
Identity = 73/164 (44.51%), Postives = 84/164 (51.22%), Query Frame = 1
Query:   31 DLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 504
            +LTY    + PD    D V      AF  WS  T LTFT+      ADI I F  GDH D  PFDGP G LAHAF P     G  H D DE W               +L  VA HE GH LGL HS+   A+MYPS +  S  V+L+ DDI GIQA+YG + N
Sbjct:  113 NLTYRIENYTPDLSRAD-VDQAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGAGIGGDAHFDDDEWWT--------SNFQDYNLYRVAAHEFGHSLGLAHSTDIGALMYPSYTF-SGDVQLSQDDIDGIQAIYGPSQN 265          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP20_HUMAN (Matrix metalloproteinase-20 OS=Homo sapiens GN=MMP20 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.086e-24
Identity = 69/175 (39.43%), Postives = 83/175 (47.43%), Query Frame = 1
Query:    1 GMPRWPSNKRDLTYAFLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNG 513
            G P+W  N      +    +  + EV      A   WS A  L+F R +    ADI I F  GDHGD  PFDGP GTLAHAF+P     G  H D  E W               +L +VA HE GH LGL HS+   A+MYP+          L  DD++GIQALYG    F G
Sbjct:  113 GEPKWKKNTLTYRISKYTPSMSSVEVDKAVEMALQAWSSAVPLSFVRINS-GEADIMISFENGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWT--------MGTNGFNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKGIQALYGPRKVFLG 278          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP13_MOUSE (Collagenase 3 OS=Mus musculus GN=Mmp13 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.724e-24
Identity = 74/165 (44.85%), Postives = 91/165 (55.15%), Query Frame = 1
Query:   22 NKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYT-TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 492
            ++ +LTY    + PD   + EV+  F  AF  WS+ T L FTR  +Y  TADI I F T +HGD  PFDGP G LAHAF P PN  G  H D DE W               +L  VA HE+GH LGL HS    A+M+P  + +G     L +DD+QGIQ LYG
Sbjct:  115 SQTNLTYRIVNYTPDMSHS-EVEKAFRKAFKVWSDVTPLNFTR--IYDGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGYNLFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQFLYG 268          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP13_RAT (Collagenase 3 (Fragment) OS=Rattus norvegicus GN=Mmp13 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.557e-24
Identity = 73/164 (44.51%), Postives = 90/164 (54.88%), Query Frame = 1
Query:   22 NKRDLTYA---FLPDNQLTDEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 492
            ++ +LTY    + PD   + EV+  F  AF  WS+ T L FTR     TADI I F T +HGD  PFDGP G LAHAF P PN  G  H D DE W               +L  VA HE+GH LGL HS    A+M+P  + +G     L +DD+QGIQ+LYG
Sbjct:  109 SQTNLTYRIVNYTPDISHS-EVEKAFRKAFKVWSDVTPLNFTRIHD-GTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNLGGDAHFDDDETWT--------SSSKGYNLFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 262          
BLAST of CF509998 vs. ExPASy Swiss-Prot
Match: MMP13_RABIT (Collagenase 3 OS=Oryctolagus cuniculus GN=MMP13 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.557e-24
Identity = 75/165 (45.45%), Postives = 90/165 (54.55%), Query Frame = 1
Query:   22 NKRDLTYA---FLPDNQLT-DEVKNVFATAFDRWSEATSLTFTRTDVYTTADIRIGFFTGDHGDGEPFDGPMGTLAHAFSP-PN--GRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYG 492
            ++ +LTY    + PD  LT  EV+  F  AF  WS+ T L FTR     TADI I F T +HGD  PFDGP G LAHAF P PN  G  H D DE W               +L  VA HE GH LGL HS    A+M+P  + +G     L +DD+QGIQ+LYG
Sbjct:  114 SQTNLTYRIVNYTPD--LTHSEVEKAFKKAFKVWSDVTPLNFTRIH-NGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--------SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 267          
The following BLAST results are available for this feature:
BLAST of CF509998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
MMP13_HORSE4.202e-2546.47Collagenase 3 OS=Equus caballus GN=MMP13 PE=2 SV=1[more]
MMP20_BOVIN5.488e-2539.43Matrix metalloproteinase-20 OS=Bos taurus GN=MMP20... [more]
MMP8_HUMAN9.362e-2542.05Neutrophil collagenase OS=Homo sapiens GN=MMP8 PE=... [more]
MMP1_HORSE1.223e-2442.53Interstitial collagenase OS=Equus caballus GN=MMP1... [more]
MMP13_BOVIN1.223e-2446.06Collagenase 3 OS=Bos taurus GN=MMP13 PE=2 SV=1[more]
MMP1_BOVIN1.597e-2444.51Interstitial collagenase OS=Bos taurus GN=MMP1 PE=... [more]
MMP20_HUMAN2.086e-2439.43Matrix metalloproteinase-20 OS=Homo sapiens GN=MMP... [more]
MMP13_MOUSE2.724e-2444.85Collagenase 3 OS=Mus musculus GN=Mmp13 PE=1 SV=1[more]
MMP13_RAT3.557e-2444.51Collagenase 3 (Fragment) OS=Rattus norvegicus GN=M... [more]
MMP13_RABIT3.557e-2445.45Collagenase 3 OS=Oryctolagus cuniculus GN=MMP13 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-513 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-83_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509998 ID=CF509998; Name=CF509998; organism=Citrus sinensis; type=EST; length=582bp
GGCATGCCACGTTGGCCTTCGAATAAGCGCGATCTGACGTACGCGTTCTT
GCCCGATAACCAATTGACTGACGAAGTCAAGAACGTATTTGCGACAGCCT
TTGACCGCTGGTCGGAAGCGACGTCGTTGACTTTCACTCGGACGGACGTT
TACACGACCGCCGATATCAGGATCGGGTTCTTTACTGGCGATCACGGTGA
CGGCGAGCCGTTTGATGGGCCTATGGGCACGCTGGCGCACGCCTTCTCGC
CACCAAATGGACGGTTCCATTTAGACGGCGACGAGAACTGGGTAATCACG
AGTGGTACTACAACGTCGATATCGATGTCGGCGATTGATCTTGAGTCAGT
TGCTGTTCATGAGATTGGCCACTTGTTAGGGTTGGGGCATTCATCTGTTG
AAGATGCGATAATGTACCCTTCAATTTCTTCTGGATCCAGGAAAGTTGAA
TTGGCCAACGATGATATACAGGGGATCCAGGCCCTGTACGGTAATAATCC
AAATTTTAACGGCTCATCTGCGCCGACCGATCAACAGAGGGACACCAGCG
ATGCCCATGGGGGCTTATTTTTTGGGCTCTTG
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