CF510035
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: YL419_YEAST (Putative ATP-dependent RNA helicase YLR419W OS=Saccharomyces cerevisiae GN=YLR419W PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14 Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 2 Query: 152 GDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQA 478 G I++FL G EI+ C L K + + +VLP++SAL E Q R+F+ G RKVVV+TNIAE S+TID ID G AK YNPK L+ + IS+A Sbjct: 864 GSIIVFLPGVGEINKCCNLLANK-----SNEADFMVLPLHSALTPEDQKRVFKKYH-GKRKVVVSTNIAETSITIDDCVATIDTGRAKSMFYNPKDNTTKLIESFISKA 966
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: DHX37_HUMAN (Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 4.146e-13 Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 2 Query: 251 LVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASA 484 L VLP+YS L E Q+++F+P P G R VVATN+AE SLTI GI YV+D G K+ Y+ + S +T +SQASA Sbjct: 588 LHVLPLYSLLAPEKQAQVFKPPPEGTRLCVVATNVAETSLTIPGIKYVVDCGKVKKRYYDRVTGVSSFRVTWVSQASA 665
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13 Identity = 47/131 (35.88%), Postives = 73/131 (55.73%), Query Frame = 2 Query: 113 LITVLQIHVDEP------EGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASAL 487 LI L +++D+ EG +L+FL G I + L + + V+ ++S L ++ Q+ F PPG RK+V+ATNIAE +TI + +VID G K+N Y+ ++ SLV T +S+ASAL Sbjct: 848 LILELLVYLDKSPQFRNIEGAVLIFLPGLAHIQQLYDLLSSDRRFYSE---RYQVIALHSVLSTQDQAAAFMFPPPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASAL 975
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13 Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 2 Query: 149 EGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASAL 487 EG +L+FL G I + L + + V+ ++S L ++ Q+ F PPG RK+V+ATNIAE +TI + +VID G K+N Y+ ++ SLV T +S+ASAL Sbjct: 867 EGAVLIFLPGLAHIQQLYDLLSNDRRFYSE---RYKVIALHSILSTQDQAAAFTLPPPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASAL 976
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.058e-12 Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 2 Query: 149 EGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASAL 487 EG +L+FL G +I + L + + +L+ L +S L S+ Q+ F P G RK+V+ATNIAE +TI + +VID G K+N Y+ ++ SLV T IS+ASAL Sbjct: 861 EGAVLIFLPGLADIQQLYDILSSDKRFHDRRRYKLIAL--HSILSSQDQAEAFILPPAGTRKIVLATNIAETGITIPDVVFVIDAGRTKENRYHESSQMSSLVETFISKASAL 971
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.687e-12 Identity = 39/110 (35.45%), Postives = 65/110 (59.09%), Query Frame = 2 Query: 152 GDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQAS 481 G IL+F G EI A +++ ++ K + +LP+++ L ++ Q R+F+P G RK+VV+TN+AE S+TI + YV+D G K+ + P+ L LV S+A+ Sbjct: 1026 GAILVFCPGVGEIRQAIDAITTSVRGQSK----VEILPLHANLSADEQRRVFQPVGAGRRKIVVSTNVAETSITIPDVSYVVDTGRVKETRFEPESGLTRLVECWASRAA 1131
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: MLE_DROME (Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 2.687e-12 Identity = 56/208 (26.92%), Postives = 83/208 (39.90%), Query Frame = 2 Query: 2 RFSGYFFNCNIFSIPGRTFPV-----------------------------------------DINYSRQVVTDYLDSA---------------LITVLQIHVDEPE--GDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDS 451 +FS YF C + +PGR FPV +INY++ Y L+ L +H+ G IL+FL G I FA + G D + +LP +S +P + Q ++FEP P G K++++TNIAE S+TID I +VID A+ ++ L S Sbjct: 546 KFSKYFGICPVLEVPGRAFPVQQFFLEDIIQMTDFVPSAESRRKRKEVEDEEQLLSEDKDEAEINYNKVCEDKYSQKTRNAMAMLSESDVSFELLEALLMHIKSKNIPGAILVFLPGWNLI-FALMKFLQNTNIFG-DTSQYQILPCHSQIPRDEQRKVFEPVPEGVTKIILSTNIAETSITIDDIVFVIDICKARMKLFTSHNNLTS 751
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: DQX1_HUMAN (ATP-dependent RNA helicase DQX1 OS=Homo sapiens GN=DQX1 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 2.687e-12 Identity = 46/137 (33.58%), Postives = 76/137 (55.47%), Query Frame = 2 Query: 74 YSRQVVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASA 484 Y + D +++A VL++ E GD+L+FL +EEI CESL ++++L VLP++ +Q+ ++E RKVVV +A+ S ++ I +VID G ++VYNP+ R + V+ PIS+ A Sbjct: 236 YWDTIPPDRVEAACQAVLELCRKELPGDVLVFLPSEEEISLCCESLSREVESLLLQGLPPRVLPLHPDCGRAVQA-VYEDMD--ARKVVVTHWLADFSFSLPSIQHVIDSGLELRSVYNPRIRAEFQVLRPISKCQA 369
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: KZ_DROME (Probable ATP-dependent RNA helicase kurz OS=Drosophila melanogaster GN=kz PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12 Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 2 Query: 251 LVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASA 484 L VLP+YS L SE Q+RIF P P G R VV+TN+AE SLTI I YV+D G K +Y+ + + V+T S+ASA Sbjct: 617 LWVLPLYSLLSSEKQNRIFLPVPDGCRLCVVSTNVAETSLTIPHIKYVVDCGRQKTRLYDKLTGVSAFVVTYTSKASA 694
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: RHA2_CAEEL (Putative ATP-dependent RNA helicase rha-2 OS=Caenorhabditis elegans GN=rha-2 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 1.742e-11 Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 2 Query: 239 DVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQAS 481 D L LP+YS L Q R+F+ P G R V++TN+AE SLTI G+ YVID GF K+ +Y+ + + ISQAS Sbjct: 571 DCEPLYCLPLYSLLSMGKQRRVFDETPAGMRLCVISTNVAETSLTIPGVKYVIDGGFEKRRLYDSITGVSRFAVCRISQAS 651 The following BLAST results are available for this feature:
BLAST of CF510035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >CF510035 ID=CF510035; Name=CF510035; organism=Citrus sinensis; type=EST; length=487bpback to top |