CF510035

Overview
NameCF510035
Unique NameCF510035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: YL419_YEAST (Putative ATP-dependent RNA helicase YLR419W OS=Saccharomyces cerevisiae GN=YLR419W PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  152 GDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQA 478
            G I++FL G  EI+  C  L  K      +  + +VLP++SAL  E Q R+F+    G RKVVV+TNIAE S+TID     ID G AK   YNPK     L+ + IS+A
Sbjct:  864 GSIIVFLPGVGEINKCCNLLANK-----SNEADFMVLPLHSALTPEDQKRVFKKYH-GKRKVVVSTNIAETSITIDDCVATIDTGRAKSMFYNPKDNTTKLIESFISKA 966          
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: DHX37_HUMAN (Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.146e-13
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 2
Query:  251 LVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASA 484
            L VLP+YS L  E Q+++F+P P G R  VVATN+AE SLTI GI YV+D G  K+  Y+    + S  +T +SQASA
Sbjct:  588 LHVLPLYSLLAPEKQAQVFKPPPEGTRLCVVATNVAETSLTIPGIKYVVDCGKVKKRYYDRVTGVSSFRVTWVSQASA 665          
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 47/131 (35.88%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  113 LITVLQIHVDEP------EGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASAL 487
            LI  L +++D+       EG +L+FL G   I    + L    +   +      V+ ++S L ++ Q+  F   PPG RK+V+ATNIAE  +TI  + +VID G  K+N Y+   ++ SLV T +S+ASAL
Sbjct:  848 LILELLVYLDKSPQFRNIEGAVLIFLPGLAHIQQLYDLLSSDRRFYSE---RYQVIALHSVLSTQDQAAAFMFPPPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASAL 975          
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 2
Query:  149 EGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASAL 487
            EG +L+FL G   I    + L    +   +      V+ ++S L ++ Q+  F   PPG RK+V+ATNIAE  +TI  + +VID G  K+N Y+   ++ SLV T +S+ASAL
Sbjct:  867 EGAVLIFLPGLAHIQQLYDLLSNDRRFYSE---RYKVIALHSILSTQDQAAAFTLPPPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASAL 976          
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.058e-12
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 2
Query:  149 EGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASAL 487
            EG +L+FL G  +I    + L    +   +   +L+ L  +S L S+ Q+  F   P G RK+V+ATNIAE  +TI  + +VID G  K+N Y+   ++ SLV T IS+ASAL
Sbjct:  861 EGAVLIFLPGLADIQQLYDILSSDKRFHDRRRYKLIAL--HSILSSQDQAEAFILPPAGTRKIVLATNIAETGITIPDVVFVIDAGRTKENRYHESSQMSSLVETFISKASAL 971          
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.687e-12
Identity = 39/110 (35.45%), Postives = 65/110 (59.09%), Query Frame = 2
Query:  152 GDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQAS 481
            G IL+F  G  EI  A +++   ++   K    + +LP+++ L ++ Q R+F+P   G RK+VV+TN+AE S+TI  + YV+D G  K+  + P+  L  LV    S+A+
Sbjct: 1026 GAILVFCPGVGEIRQAIDAITTSVRGQSK----VEILPLHANLSADEQRRVFQPVGAGRRKIVVSTNVAETSITIPDVSYVVDTGRVKETRFEPESGLTRLVECWASRAA 1131          
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: MLE_DROME (Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.687e-12
Identity = 56/208 (26.92%), Postives = 83/208 (39.90%), Query Frame = 2
Query:    2 RFSGYFFNCNIFSIPGRTFPV-----------------------------------------DINYSRQVVTDYLDSA---------------LITVLQIHVDEPE--GDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDS 451
            +FS YF  C +  +PGR FPV                                         +INY++     Y                   L+  L +H+      G IL+FL G   I FA     +     G D  +  +LP +S +P + Q ++FEP P G  K++++TNIAE S+TID I +VID   A+  ++     L S
Sbjct:  546 KFSKYFGICPVLEVPGRAFPVQQFFLEDIIQMTDFVPSAESRRKRKEVEDEEQLLSEDKDEAEINYNKVCEDKYSQKTRNAMAMLSESDVSFELLEALLMHIKSKNIPGAILVFLPGWNLI-FALMKFLQNTNIFG-DTSQYQILPCHSQIPRDEQRKVFEPVPEGVTKIILSTNIAETSITIDDIVFVIDICKARMKLFTSHNNLTS 751          
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: DQX1_HUMAN (ATP-dependent RNA helicase DQX1 OS=Homo sapiens GN=DQX1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.687e-12
Identity = 46/137 (33.58%), Postives = 76/137 (55.47%), Query Frame = 2
Query:   74 YSRQVVTDYLDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASA 484
            Y   +  D +++A   VL++   E  GD+L+FL  +EEI   CESL  ++++L        VLP++      +Q+ ++E      RKVVV   +A+ S ++  I +VID G   ++VYNP+ R +  V+ PIS+  A
Sbjct:  236 YWDTIPPDRVEAACQAVLELCRKELPGDVLVFLPSEEEISLCCESLSREVESLLLQGLPPRVLPLHPDCGRAVQA-VYEDMD--ARKVVVTHWLADFSFSLPSIQHVIDSGLELRSVYNPRIRAEFQVLRPISKCQA 369          
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: KZ_DROME (Probable ATP-dependent RNA helicase kurz OS=Drosophila melanogaster GN=kz PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  251 LVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQASA 484
            L VLP+YS L SE Q+RIF P P G R  VV+TN+AE SLTI  I YV+D G  K  +Y+    + + V+T  S+ASA
Sbjct:  617 LWVLPLYSLLSSEKQNRIFLPVPDGCRLCVVSTNVAETSLTIPHIKYVVDCGRQKTRLYDKLTGVSAFVVTYTSKASA 694          
BLAST of CF510035 vs. ExPASy Swiss-Prot
Match: RHA2_CAEEL (Putative ATP-dependent RNA helicase rha-2 OS=Caenorhabditis elegans GN=rha-2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.742e-11
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 2
Query:  239 DVPELVVLPVYSALPSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVITPISQAS 481
            D   L  LP+YS L    Q R+F+  P G R  V++TN+AE SLTI G+ YVID GF K+ +Y+    +    +  ISQAS
Sbjct:  571 DCEPLYCLPLYSLLSMGKQRRVFDETPAGMRLCVISTNVAETSLTIPGVKYVIDGGFEKRRLYDSITGVSRFAVCRISQAS 651          
The following BLAST results are available for this feature:
BLAST of CF510035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
YL419_YEAST6.396e-1444.04Putative ATP-dependent RNA helicase YLR419W OS=Sac... [more]
DHX37_HUMAN4.146e-1351.28Probable ATP-dependent RNA helicase DHX37 OS=Homo ... [more]
DHX29_MOUSE7.072e-1335.88ATP-dependent RNA helicase Dhx29 OS=Mus musculus G... [more]
DHX29_HUMAN9.236e-1338.05ATP-dependent RNA helicase DHX29 OS=Homo sapiens G... [more]
DHX29_XENLA2.058e-1239.82ATP-dependent RNA helicase DHX29 OS=Xenopus laevis... [more]
YUM14_USTMA2.687e-1235.45Putative DEAH-box ATP-dependent helicase UM11114 O... [more]
MLE_DROME2.687e-1226.92Dosage compensation regulator OS=Drosophila melano... [more]
DQX1_HUMAN2.687e-1233.58ATP-dependent RNA helicase DQX1 OS=Homo sapiens GN... [more]
KZ_DROME3.510e-1251.28Probable ATP-dependent RNA helicase kurz OS=Drosop... [more]
RHA2_CAEEL1.742e-1144.44Putative ATP-dependent RNA helicase rha-2 OS=Caeno... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-550 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510035 ID=CF510035; Name=CF510035; organism=Citrus sinensis; type=EST; length=487bp
GAGATTTTCGGGATATTTCTTCAACTGCAACATCTTCAGTATTCCAGGGA
GAACATTTCCAGTTGATATAAACTACTCCAGACAGGTGGTAACTGATTAT
CTAGATTCAGCATTGATCACAGTCTTGCAGATCCACGTCGATGAACCTGA
AGGTGATATTCTTCTTTTCTTGACGGGTCAAGAGGAGATAGATTTTGCAT
GTGAGTCGCTTTGCGAGAAGATTAAAGCCCTGGGTAAAGATGTTCCTGAA
CTGGTTGTTTTACCAGTTTACAGTGCGCTGCCAAGTGAAATTCAATCAAG
AATATTTGAACCTGCCCCTCCAGGGGGGAGGAAAGTGGTTGTGGCCACTA
ACATTGCTGAGGCTTCTTTGACTATTGATGGGATATTTTATGTTATTGAT
CCCGGCTTTGCAAAGCAAAATGTCTATAATCCGAAGCAAAGGCTTGATTC
ACTGGTCATAACTCCAATTTCACAAGCATCAGCCCTG
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