CF510080

Overview
NameCF510080
Unique NameCF510080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 40/121 (33.06%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  363 SAELDPKTGL-----DKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            S + DP  GL     + + ++++   +     G   +   F+    FG  GA +++N H  E +LK + L+ +PN G V+  CNSW++     K  R+FF N+ YLPS+TP+ L++YR  E
Sbjct:   59 SVQSDPANGLQGKHSNPAYLENFLLTLTPLAAGETAFGVTFDWNEEFGVPGAFVIKNMHINEFFLKSLTLEDVPNHGKVHFVCNSWVYPSFRYKSDRIFFANQPYLPSETPELLRKYRENE 179          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  468 FEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVT-----CNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            F+     G   A +++N HH + YLK + L G P+G    T     CNSW++  H  +  RVFF+NK YLPS+TP+ +K  R EE
Sbjct:  116 FDWDESMGPPAAFVIKNHHHSQFYLKSLTLRGFPDGEGGATAIHFICNSWIYPNHRYRSDRVFFSNKAYLPSETPELIKELREEE 200          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 40/118 (33.90%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  360 VSAELDPKTGLDKSTIQDYARKI--GADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            VS E+DP+TG  + +++     +         + + ++F VP  FG+ GAILV N    E+ L +I+++   +  +    N+W+HSK+DN Q R+ F ++  LPS+TPDG+K  R ++
Sbjct:  120 VSEEIDPETGKGRKSLESPVMGLPKAVKDPRYLVFTADFTVPINFGKPGAILVTNLLSTEICLSEIIIEDSTD-TILFPANTWIHSKNDNPQARIIFRSQPCLPSETPDGIKELREKD 236          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  405 IQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLP-NGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            ++D+   I +   G   ++  F+  + FG  GA L+ N H  E  LK + L+ +P +G V+  CNSW++        RVFF+NK YLP +TP  L +YR EE
Sbjct:   80 LEDWITTITSLTAGESAFKVTFDYETDFGYPGAFLIRNSHFSEFLLKSLTLEDVPGHGRVHYICNSWIYPAKHYTTDRVFFSNKTYLPHETPATLLKYREEE 181          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 3
Query:  366 AELDPKTGLDKST-IQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            A+ + K  L K+T ++     +   G G   ++  FE   G G +GA  ++N    E +L  + L+ +PN G ++  CNSW+++    K  R+FF N+ YLPS+TP  L +YR EE
Sbjct:   68 ADANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWDDGSGILGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEE 183          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 3
Query:  468 FEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            F+    FG  GA +++N H  E +LK + L+ +PN G V+  CNSW++   + K  R+FF N+ YLPS+TP+ L++YR  E
Sbjct:  100 FDWNEEFGVPGAFIIKNMHINEFFLKSLTLEDVPNHGKVHFVCNSWVYPSLNYKSDRIFFANQPYLPSETPELLRKYRENE 180          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  486 FGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            FG  GA +++N H  E +LK + L+ +PN G ++  CNSW++     K  R+FF N+ YLPS+TP  L++YR  E
Sbjct:  104 FGVPGAFIIKNLHLNEFFLKSLTLEDVPNYGKIHFVCNSWVYPAFRYKSDRIFFANQAYLPSETPQPLRKYRENE 178          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 3
Query:  438 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            G G   +   FE     G  GA  ++N    E +LK + L+ +PN G +   CNSW+++    K  R+FF NK YLPS+TP  L +YR EE
Sbjct:  101 GAGESAFNIHFEWDHEMGIPGAFYIKNYMQVEFFLKSLTLEDVPNHGTIRFVCNSWVYNSKLYKSPRIFFANKSYLPSETPSPLVKYREEE 191          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 3
Query:  438 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            GD    +   FE    FG   A  ++N    E +L  + L+ +PN G ++  CNSW+++    K+ R+FF NK YLP++TP  L +YR EE
Sbjct:  101 GDRQDAFNVYFEWDENFGIPEAFYIKNFMQSEFFLVSLTLEDIPNHGTIHFVCNSWVYNAKSYKRDRIFFANKTYLPNETPASLVKYRKEE 191          
BLAST of CF510080 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 3
Query:  438 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 707
            G G   ++  FE     G  GA  ++N    E +L  + LD +PN G +   CNSW+++   +K  R+FF N+ YLPS+TP  L  YR EE
Sbjct:   96 GAGQSAFKIHFEWDDDMGIPGAFYIKNFMQTEFFLVSLTLDDIPNHGSIYFVCNSWIYNAKHHKIDRIFFANQTYLPSETPAPLVHYREEE 186          
The following BLAST results are available for this feature:
BLAST of CF510080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
LOXA_SOLLC1.084e-1333.06Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX5_ARATH1.084e-1341.18Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ARATH1.415e-1333.90Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX1_ARATH2.414e-1337.25Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX3_SOYBN4.118e-1334.48Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX1_SOLTU5.379e-1341.98Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOXB_SOLLC1.198e-1242.67Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX2_PEA1.565e-1239.56Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOXA_PHAVU5.947e-1237.36Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX3_PEA5.947e-1238.46Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-595 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510080 ID=CF510080; Name=CF510080; organism=Citrus sinensis; type=EST; length=708bp
AAATTCTAAAGCATCTTCTTCTTACTTGAAAAACAATGTTGAAGCCACAG
GTTCATCAACCTCAATCTATCAAACCCCTATTTCCATTATCCAAGCCGTT
TCTCCATGGAAATTACGGCCATGCCTTTCGTCCAGTTCAATCAACTTCTA
CACTTTTTAAAGGAAGTCCCAAACTTCGGATTGGTTCTGTTCCCAGAAAC
ACTATCAAAGCTATAGCAACTTCCACTGAAAAATCAATCAAAGTTAAGGC
TGTTGTTACTGTGAAACCAACTGTGGGAGGCTTCCTCTCAAATATTTCTT
TAGACCAAGGGTTAGATGATCTTGGAGATTTGTTTGGTAAATCACTCCTC
TTGGAGCTTGTCAGTGCTGAGCTTGACCCCAAGACGGGATTGGATAAATC
CACCATCCAAGATTATGCGCGCAAAATTGGTGCGGACGGGGATGGAAACA
TGCAATATGAATCAGAATTCGAAGTCCCATCTGGATTTGGAGAAATTGGC
GCAATATTAGTGGAAAATGAGCACCACAAAGAGATGTATTTGAAAGATAT
TGTTCTTGATGGTTTGCCAAATGGTCCTGTCAACGTAACATGTAATTCAT
GGCTTCACTCAAAGCACGACAATAAACAAAAGAGAGTTTTCTTTACCAAC
AAGTTGTACTTGCCATCACAAACACCAGACGGATTGAAGAGATATAGAGC
TGAGGAGC
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