CF510127

Overview
NameCF510127
Unique NameCF510127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length407
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9A_SCHPO (40S ribosomal protein S9-A OS=Schizosaccharomyces pombe GN=rps9a PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.263e-30
Identity = 60/80 (75.00%), Postives = 74/80 (92.50%), Query Frame = 2
Query:    2 ALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 241
            AL +E+FLERRLQT VFK G+AKSIHHARVLI QRHIRVG+Q+VN+PSFVVR+D+QKHI+F+L+SP+GGGRPGR KR+ +
Sbjct:   98 ALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRL 177          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9_CAEEL (40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.494e-30
Identity = 60/79 (75.95%), Postives = 72/79 (91.14%), Query Frame = 2
Query:    5 LTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 241
            L VE+FLERRLQT VFK G+AKSIHHAR+LI+Q HIRV RQ+V++PSF+VR+DSQKHI+FSL SP+GGGRPGRVKRR +
Sbjct:   99 LKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTL 177          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9B_YEAST (40S ribosomal protein S9-B OS=Saccharomyces cerevisiae GN=RPS9B PE=1 SV=4)

HSP 1 Score: 126.716 bits (317), Expect = 3.608e-29
Identity = 60/79 (75.95%), Postives = 71/79 (89.87%), Query Frame = 2
Query:    2 ALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 238
            AL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:   98 ALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9A_YEAST (40S ribosomal protein S9-A OS=Saccharomyces cerevisiae GN=RPS9A PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 3.608e-29
Identity = 60/79 (75.95%), Postives = 71/79 (89.87%), Query Frame = 2
Query:    2 ALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 238
            AL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:   98 ALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9_DICDI (40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.189e-26
Identity = 55/77 (71.43%), Postives = 68/77 (88.31%), Query Frame = 2
Query:    5 LTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRR 235
            L V++F+ERRLQTLVFK+G+AKSIHHARVLI+ RHIRVG+QLVN+PSF+VRV+SQKH+  + TSP  GGRPGR  R+
Sbjct:   96 LKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARK 172          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9_TRYBB (Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.391e-25
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = 2
Query:    2 ALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 232
            +LTV + LERRLQT+VFK G+AKS+HH+RVLI+QRHI V +Q+V IPSF+VRV S+ HI F+  SPFG GRPGRVKR
Sbjct:   97 SLTVPDILERRLQTVVFKHGLAKSVHHSRVLIQQRHIAVAKQIVTIPSFIVRVSSEHHIAFADASPFGNGRPGRVKR 173          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.494e-24
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 2
Query:   65 AKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 238
            AKS+HHARVLIRQRHIRVGRQ+VN+PSF+VR+DSQKHI+FSL SPFGGGRPGRVKR+N
Sbjct:    1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKN 58          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9_NAEFO (40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.056e-21
Identity = 49/81 (60.49%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 ALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS-LTSPFGGGRPGRVKRRNI 241
            +L  E+ LERRLQT+V K G++KSIHHAR LI QRHIRVG+Q VN+PSF+VRVDS+KHI  S  ++   GG+PGR+ R+ +
Sbjct:  100 SLKTEDLLERRLQTVVQKLGLSKSIHHARQLIFQRHIRVGKQTVNVPSFIVRVDSEKHINMSPFSALVQGGKPGRMTRKKL 180          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9_ENTHI (40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.057e-17
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 2
Query:    2 ALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR-PGRVKRRN 238
            AL  EN LERRLQTLV++ G AKSIHHARVLIR + I+VG+Q+V++PSF+VRV+S+  I+ +  +P       GR KR+N
Sbjct:   98 ALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKN 177          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.234e-12
Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 2
Query:    5 LTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG 205
            LT+ ++LERRLQ  VF +G+AKS+HHAR+LI  R I +  Q+V++P F+VR D +  IE++  S +G
Sbjct:  104 LTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170          
The following BLAST results are available for this feature:
BLAST of CF510127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS9A_SCHPO3.263e-3075.0040S ribosomal protein S9-A OS=Schizosaccharomyces ... [more]
RS9_CAEEL9.494e-3075.9540S ribosomal protein S9 OS=Caenorhabditis elegans... [more]
RS9B_YEAST3.608e-2975.9540S ribosomal protein S9-B OS=Saccharomyces cerevi... [more]
RS9A_YEAST3.608e-2975.9540S ribosomal protein S9-A OS=Saccharomyces cerevi... [more]
RS9_DICDI2.189e-2671.4340S ribosomal protein S9 OS=Dictyostelium discoide... [more]
RS9_TRYBB5.391e-2568.83Probable 40S ribosomal protein S9 OS=Trypanosoma b... [more]
RS9_TOBAC3.494e-2486.2140S ribosomal protein S9 (Fragment) OS=Nicotiana t... [more]
RS9_NAEFO8.056e-2160.4940S ribosomal protein S9 OS=Naegleria fowleri GN=R... [more]
RS9_ENTHI7.057e-1756.2540S ribosomal protein S9 OS=Entamoeba histolytica ... [more]
RS9_ENCCU5.234e-1249.2540S ribosomal protein S9 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-642 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510127 ID=CF510127; Name=CF510127; organism=Citrus sinensis; type=EST; length=407bp
GGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTTCAGACCCTTGTGT
TCAAGAGTGGCATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGG
CAGAGGCACATTAGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGT
AGTGAGGGTTGATTCCCAGAAGCACATTGAATTCTCACTCACAAGTCCCT
TTGGAGGCGGGCGCCCCGGAAGAGTGAAGAGAAGGAACATTAAGGCTGCT
GCCAAGAAGGCCGCAGGTGGAGATGGAGATGAAGAGGATGAAGAATAAAT
TACCTTGTGTGAGCAGATAGTTTTTTTATGGTTACAGTAGGAACTCTGGC
TGAACTTTGCAAATCGACTTATCTTCTCTTAAGTTTTATGTTTTTGCTAA
TTTTCTT
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