CF510127

Overview
NameCF510127
Unique NameCF510127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length407
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS4_IGNH4 (30S ribosomal protein S4P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.928e-12
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2
Query:    2 ALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 202
            +LTV + LERRLQT+V+K G+AKSI+HAR L+   HI +  + V  P ++VR D ++ I ++ TSP+
Sbjct:   94 SLTVRDLLERRLQTVVYKKGLAKSIYHARQLVTHGHIAINGRRVTSPGYIVRRDEEELIGYAPTSPY 160          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.558e-11
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 2
Query:    2 ALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 202
            +LTVE+ L+RRLQT+VFK G+A++I  AR LI   HI V  Q++  P ++V  + +  I +S TSPF
Sbjct:   94 SLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.558e-11
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    2 ALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 202
            +LTVE+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:   94 SLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF 160          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS4_STAMF (30S ribosomal protein S4P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    5 LTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 202
            LTVE+ LERRLQT+V+K G+A++I+HAR LI   HI +  + +  P ++V  + +  ++++ TSPF
Sbjct:   95 LTVEDLLERRLQTIVYKKGLARTIYHARQLIIHGHIAIAGRRITSPGYIVSREEEDLVDYAPTSPF 160          
BLAST of CF510127 vs. ExPASy Swiss-Prot
Match: RS4_METJA (30S ribosomal protein S4P OS=Methanocaldococcus jannaschii GN=rps4p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 2
Query:    2 ALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRVK 229
            +LTVE+ LERRLQTLVF+ G+A++   AR LI   HI V  ++V  PS++V V+ +  I ++  SPF     P R K
Sbjct:   96 SLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172          
The following BLAST results are available for this feature:
BLAST of CF510127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS4_IGNH48.928e-1247.7630S ribosomal protein S4P OS=Ignicoccus hospitalis... [more]
RS4_THEON7.558e-1147.7630S ribosomal protein S4P OS=Thermococcus onnurine... [more]
RS4_PYRHO7.558e-1146.2730S ribosomal protein S4P OS=Pyrococcus horikoshii... [more]
RS4_STAMF9.871e-1143.9430S ribosomal protein S4P OS=Staphylothermus marin... [more]
RS4_METJA9.871e-1145.4530S ribosomal protein S4P OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-642 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510127 ID=CF510127; Name=CF510127; organism=Citrus sinensis; type=EST; length=407bp
GGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTTCAGACCCTTGTGT
TCAAGAGTGGCATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGG
CAGAGGCACATTAGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGT
AGTGAGGGTTGATTCCCAGAAGCACATTGAATTCTCACTCACAAGTCCCT
TTGGAGGCGGGCGCCCCGGAAGAGTGAAGAGAAGGAACATTAAGGCTGCT
GCCAAGAAGGCCGCAGGTGGAGATGGAGATGAAGAGGATGAAGAATAAAT
TACCTTGTGTGAGCAGATAGTTTTTTTATGGTTACAGTAGGAACTCTGGC
TGAACTTTGCAAATCGACTTATCTTCTCTTAAGTTTTATGTTTTTGCTAA
TTTTCTT
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