CF510142

Overview
NameCF510142
Unique NameCF510142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y640_JANSC (UPF0161 protein Jann_0640 OS=Jannaschia sp. (strain CCS1) GN=Jann_0640 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.783e-13
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  269 LSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            + FY+  ISP++  +CRY PTCS Y+M+A +K+G +KGT L A R+ RC+P GGSG
Sbjct:   12 IRFYRLVISPMIASNCRYTPTCSSYAMEALRKHGAIKGTWLAARRVSRCHPWGGSG 67          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y1039_FERNB (UPF0161 protein Fnod_1039 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=Fnod_1039 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.783e-13
Identity = 28/62 (45.16%), Postives = 44/62 (70.97%), Query Frame = 2
Query:  251 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            +  L ++ FY++ ISPL P +CR+ PTCS Y+ QA +++G++KG +L  WR+ RCNP+   G
Sbjct:    3 KVILKLIRFYQKYISPLKPPTCRFEPTCSTYTYQAVERFGILKGLLLGFWRVLRCNPISKGG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y3682_ACIAD (UPF0161 protein ACIAD3682 OS=Acinetobacter sp. (strain ADP1) GN=ACIAD3682 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.147e-12
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  248 VRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            VR    ++ FY+  ISP++   CRY+PTCS+YS++A   +G +KGT L   R+CRC+P GGSG
Sbjct:    2 VRILHWLIRFYQIAISPMLGPRCRYIPTCSQYSLEAIHTHGAMKGTWLAIHRVCRCHPWGGSG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y256_KOSOT (UPF0161 protein Kole_0256 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=Kole_0256 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.498e-12
Identity = 27/62 (43.55%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  251 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            +  L++++FY++ ISP  P +CR+ PTCS Y+ +A +++GV KG +L  WR+ RCNP    G
Sbjct:    3 KIVLTLINFYRKYISPSKPPTCRFTPTCSAYTFEAVQRFGVFKGLLLGTWRILRCNPFNKGG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y1189_BACV8 (UPF0161 protein BVU_1189 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=BVU_1189 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.498e-12
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 2
Query:  275 FYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            FY+  ISP+ P SCR+VPTCSEY+++A KK+G  KG  L   R+ RC+P GGSG
Sbjct:   15 FYRGYISPMTPPSCRFVPTCSEYAIEAIKKHGPFKGLYLAVRRILRCHPWGGSG 68          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y1086_THERP (UPF0161 protein trd_1086 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=trd_1086 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.498e-12
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  251 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            + AL ++ FY+R ISP +P +CR+ PTCSEY  +A  +YG++KG VLT  RL RC+P    G
Sbjct:    3 KLALLLIRFYQRFISPGLPPACRFYPTCSEYGYEAISRYGIIKGGVLTVRRLLRCHPFHPGG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y2976_CLAM3 (UPF0161 protein CMM_2976 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=CMM_2976 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.957e-12
Identity = 28/61 (45.90%), Postives = 44/61 (72.13%), Query Frame = 2
Query:  254 AALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            AA++++S Y+R +SP+    CRY P+CS Y ++A +++G+V G VL AWR+CRC+P    G
Sbjct:   15 AAIAVISLYRRVVSPIYGDVCRYYPSCSAYGLEAVQEHGLVHGGVLAAWRVCRCHPWAEGG 75          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y410_PROMA (UPF0161 protein Pro_0410 OS=Prochlorococcus marinus GN=Pro_0410 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.556e-12
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  227 KEVNSLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            K++N++     L+++ FY+  ISPL+  SCR+VPTCSEY ++A +K+G  KG  LT  RL RCNPL   G
Sbjct:    3 KKINAVISNLFLTLIRFYRSWISPLLGPSCRFVPTCSEYGVEAIEKHGPWKGGWLTLKRLLRCNPLTPCG 72          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y2937_LEPBL (UPF0161 protein LBL_2937 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=LBL_2937 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.556e-12
Identity = 27/55 (49.09%), Postives = 42/55 (76.36%), Query Frame = 2
Query:  260 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPL 424
            + ++  YK+ ISPL+P +CR+ PTCSEY++QA+++ G  +   L+AWR+ RCNPL
Sbjct:    6 IQLIQLYKKIISPLLPPACRFTPTCSEYTIQAFRECGFFQAIQLSAWRILRCNPL 60          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y146_LEPBJ (UPF0161 protein LBJ_0146 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=LBJ_0146 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.556e-12
Identity = 27/55 (49.09%), Postives = 42/55 (76.36%), Query Frame = 2
Query:  260 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPL 424
            + ++  YK+ ISPL+P +CR+ PTCSEY++QA+++ G  +   L+AWR+ RCNPL
Sbjct:    6 IQLIQLYKKIISPLLPPACRFTPTCSEYTIQAFRECGFFQAIQLSAWRILRCNPL 60          
The following BLAST results are available for this feature:
BLAST of CF510142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
Y640_JANSC8.783e-1353.57UPF0161 protein Jann_0640 OS=Jannaschia sp. (strai... [more]
Y1039_FERNB8.783e-1345.16UPF0161 protein Fnod_1039 OS=Fervidobacterium nodo... [more]
Y3682_ACIAD1.147e-1249.21UPF0161 protein ACIAD3682 OS=Acinetobacter sp. (st... [more]
Y256_KOSOT1.498e-1243.55UPF0161 protein Kole_0256 OS=Kosmotoga olearia (st... [more]
Y1189_BACV81.498e-1257.41UPF0161 protein BVU_1189 OS=Bacteroides vulgatus (... [more]
Y1086_THERP1.498e-1250.00UPF0161 protein trd_1086 OS=Thermomicrobium roseum... [more]
Y2976_CLAM31.957e-1245.90UPF0161 protein CMM_2976 OS=Clavibacter michiganen... [more]
Y410_PROMA2.556e-1248.57UPF0161 protein Pro_0410 OS=Prochlorococcus marinu... [more]
Y2937_LEPBL2.556e-1249.09UPF0161 protein LBL_2937 OS=Leptospira borgpeterse... [more]
Y146_LEPBJ2.556e-1249.09UPF0161 protein LBJ_0146 OS=Leptospira borgpeterse... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-657 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510142 ID=CF510142; Name=CF510142; organism=Citrus sinensis; type=EST; length=437bp
GAAGACTTGGACAGTTGAAATGGCGGTTTCACTTAACTGCCATAACAAAC
CCTTGTCCACCTCGCTTAATTTCCAGAACCCTAATTTCAGTTCATCCAAA
TATCACCGTAAAAACCAAAACCATATTTCCGCTTTTCGCCTTCCCGCGAA
AACCAAAACGCACCGTATCGTAACCGTCCGTGGATTGGGCACTGACTCGG
ATCCGAACACTCCACAAGAAGATGATAAAGAGGTCAATAGTTTGGGAGTC
AGAGCTGCACTATCTATGCTGAGCTTTTACAAAAGGGAAATCTCGCCACT
GATGCCGAGGAGTTGTAGATATGTGCCAACATGTAGTGAGTACTCAATGC
AAGCGTACAAGAAATATGGAGTTGTAAAGGGCACTGTCTTGACTGCTTGG
CGTCTCTGTCGCTGCAATCCTCTTGGTGGGTCCGGAT
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