CF510142

Overview
NameCF510142
Unique NameCF510142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y1462_THEMA (UPF0161 protein TM_1462 OS=Thermotoga maritima GN=TM_1462 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.338e-12
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  260 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            + ++ FY+R ISPL P +CR+ PTCS Y +QA +K+G++KGT L   R+ RCNPL   G
Sbjct:    6 IMLIRFYQRYISPLKPPTCRFTPTCSNYFIQALEKHGLLKGTFLGLRRILRCNPLSKGG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y1354_THESQ (UPF0161 protein TRQ2_1354 OS=Thermotoga sp. (strain RQ2) GN=TRQ2_1354 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.338e-12
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  260 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            + ++ FY+R ISPL P +CR+ PTCS Y +QA +K+G++KGT L   R+ RCNPL   G
Sbjct:    6 IMLIRFYQRYISPLKPPTCRFTPTCSNYFIQALEKHGLLKGTFLGLRRILRCNPLSKGG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y1332_THEP1 (UPF0161 protein Tpet_1332 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=Tpet_1332 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.338e-12
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  260 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            + ++ FY+R ISPL P +CR+ PTCS Y +QA +K+G++KGT L   R+ RCNPL   G
Sbjct:    6 IMLIRFYQRYISPLKPPTCRFTPTCSNYFIQALEKHGLLKGTFLGLRRILRCNPLSKGG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y2145_PSYA2 (UPF0161 protein Psyc_2145 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=Psyc_2145 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.359e-12
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 2
Query:  227 KEVNSLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            K +N    +   S + FY++ ISP++P  CRY PTCS Y  QA   YGV  G++L   R+ RC+PLGG G
Sbjct:    6 KTINKYLYKLIYSFIVFYQKIISPILPARCRYYPTCSNYGKQALAWYGVWNGSLLLLKRIGRCHPLGGHG 75          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y1630_THEM4 (UPF0161 protein Tmel_1630 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=Tmel_1630 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.359e-12
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 2
Query:  260 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            L+++ FY++ ISPL P +C Y PTCSEY+ QA KK+GV KG  L   R+ RCNPL   G
Sbjct:    6 LALIRFYQKFISPLKPPTCIYTPTCSEYTYQAVKKFGVFKGLFLGFKRILRCNPLHEGG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y3901_ACIBY (UPF0161 protein ABAYE3901 OS=Acinetobacter baumannii (strain AYE) GN=ABAYE3901 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  248 VRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            VR     +  Y+  ISPL+   CRY+PTCS+Y+++A + +G +KG  L++ R+CRC+P GGSG
Sbjct:    2 VRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y3681_ACIBS (UPF0161 protein ABSDF3681 OS=Acinetobacter baumannii (strain SDF) GN=ABSDF3681 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  248 VRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            VR     +  Y+  ISPL+   CRY+PTCS+Y+++A + +G +KG  L++ R+CRC+P GGSG
Sbjct:    2 VRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y3529_ACIB3 (UPF0161 protein ABBFA_003529 OS=Acinetobacter baumannii (strain AB307-0294) GN=ABBFA_003529 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  248 VRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            VR     +  Y+  ISPL+   CRY+PTCS+Y+++A + +G +KG  L++ R+CRC+P GGSG
Sbjct:    2 VRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y3214_RUBXD (UPF0161 protein Rxyl_3214 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=Rxyl_3214 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 27/62 (43.55%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  251 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            R  + +L  Y+R +SPL P SCR+ P+CS+Y+++A ++YG +KG  + AWR+ RC+P    G
Sbjct:    4 RLVILVLRAYQRFVSPLFPPSCRFTPSCSQYAVEAVERYGPLKGGAMAAWRVLRCHPFSRGG 65          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y2982_ACIBT (UPF0161 protein A1S_2982 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=A1S_2982 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  248 VRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            VR     +  Y+  ISPL+   CRY+PTCS+Y+++A + +G +KG  L++ R+CRC+P GGSG
Sbjct:    2 VRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSG 64          
The following BLAST results are available for this feature:
BLAST of CF510142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
Y1462_THEMA3.338e-1250.85UPF0161 protein TM_1462 OS=Thermotoga maritima GN=... [more]
Y1354_THESQ3.338e-1250.85UPF0161 protein TRQ2_1354 OS=Thermotoga sp. (strai... [more]
Y1332_THEP13.338e-1250.85UPF0161 protein Tpet_1332 OS=Thermotoga petrophila... [more]
Y2145_PSYA24.359e-1245.71UPF0161 protein Psyc_2145 OS=Psychrobacter arcticu... [more]
Y1630_THEM44.359e-1254.24UPF0161 protein Tmel_1630 OS=Thermosipho melanesie... [more]
Y3901_ACIBY5.693e-1246.03UPF0161 protein ABAYE3901 OS=Acinetobacter baumann... [more]
Y3681_ACIBS5.693e-1246.03UPF0161 protein ABSDF3681 OS=Acinetobacter baumann... [more]
Y3529_ACIB35.693e-1246.03UPF0161 protein ABBFA_003529 OS=Acinetobacter baum... [more]
Y3214_RUBXD5.693e-1243.55UPF0161 protein Rxyl_3214 OS=Rubrobacter xylanophi... [more]
Y2982_ACIBT5.693e-1246.03UPF0161 protein A1S_2982 OS=Acinetobacter baumanni... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-657 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510142 ID=CF510142; Name=CF510142; organism=Citrus sinensis; type=EST; length=437bp
GAAGACTTGGACAGTTGAAATGGCGGTTTCACTTAACTGCCATAACAAAC
CCTTGTCCACCTCGCTTAATTTCCAGAACCCTAATTTCAGTTCATCCAAA
TATCACCGTAAAAACCAAAACCATATTTCCGCTTTTCGCCTTCCCGCGAA
AACCAAAACGCACCGTATCGTAACCGTCCGTGGATTGGGCACTGACTCGG
ATCCGAACACTCCACAAGAAGATGATAAAGAGGTCAATAGTTTGGGAGTC
AGAGCTGCACTATCTATGCTGAGCTTTTACAAAAGGGAAATCTCGCCACT
GATGCCGAGGAGTTGTAGATATGTGCCAACATGTAGTGAGTACTCAATGC
AAGCGTACAAGAAATATGGAGTTGTAAAGGGCACTGTCTTGACTGCTTGG
CGTCTCTGTCGCTGCAATCCTCTTGGTGGGTCCGGAT
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