CF510142

Overview
NameCF510142
Unique NameCF510142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y3237_LARHH (UPF0161 protein LHK_03237 OS=Laribacter hongkongensis (strain HLHK9) GN=LHK_03237 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  251 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            R  L+++ FY+  ISP +P  CRY PTCS+Y+++A +K+G +KG  L   R+ RC+P G SG
Sbjct:    3 RIVLALIRFYQLAISPWLPPRCRYQPTCSQYAIEAVQKHGALKGGWLALRRIGRCHPWGSSG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y2594_SYNJA (UPF0161 protein CYA_2594 OS=Synechococcus sp. (strain JA-3-3Ab) GN=CYA_2594 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11
Identity = 26/57 (45.61%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  251 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNP 421
            R  ++++  Y+  ISPL+P +CRY PTCS+Y+++A ++YG ++G+ L   RLCRC+P
Sbjct:   10 RGLVALIRGYQVAISPLLPPACRYYPTCSQYTLEAVRRYGAIRGSWLGIRRLCRCHP 66          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y2130_PELLD (UPF0161 protein Plut_2130 OS=Pelodictyon luteolum (strain DSM 273) GN=Plut_2130 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11
Identity = 25/62 (40.32%), Postives = 42/62 (67.74%), Query Frame = 2
Query:  251 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            +A L+++ FY+  +SP+ P SCR+ PTCS Y+++A++ +   K + L+ WR+ RCNP    G
Sbjct:    9 KAPLALIKFYRAILSPMFPPSCRFYPTCSAYALEAFETHNFFKASWLSLWRILRCNPFSKGG 70          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y605_LACS1 (UPF0161 protein LSL_0605 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=LSL_0605 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.690e-11
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 2
Query:  251 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            +  + ++  Y++ ISP+ P +CRY PTCS Y++ A KK+G+VKG ++  +R+ RCNP    G
Sbjct:   10 KGIIFLIRCYQKYISPMFPPTCRYYPTCSNYAIDAIKKHGIVKGIIMGIFRILRCNPFVEGG 71          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y5058_DESHY (UPF0161 protein DSY5058 OS=Desulfitobacterium hafniense (strain Y51) GN=DSY5058 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.690e-11
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 2
Query:  251 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            R  + M+  Y+R ISPL   SCR+ PTCSEYS+QA +KYGVVKG   +  R+ +C+P    G
Sbjct:    4 RLLIGMIRIYQRYISPLKRPSCRFYPTCSEYSIQAIQKYGVVKGCWKSLVRILKCHPFHPGG 65          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y4515_ANAD2 (UPF0161 protein A2cp1_4515 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=A2cp1_4515 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.690e-11
Identity = 29/64 (45.31%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  248 VRAALSML-SFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            +RAAL +L   Y+R +SPL+P +CR+ P+CS Y++ A +++G ++G+ LT  RLCRC+P    G
Sbjct:    2 IRAALVLLVRIYQRLVSPLLPPACRFYPSCSAYAVTALQRHGALRGSWLTVRRLCRCHPFHAGG 65          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y4496_ANASK (UPF0161 protein AnaeK_4496 OS=Anaeromyxobacter sp. (strain K) GN=AnaeK_4496 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.690e-11
Identity = 29/64 (45.31%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  248 VRAALSML-SFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            +RAAL +L   Y+R +SPL+P +CR+ P+CS Y++ A +++G ++G+ LT  RLCRC+P    G
Sbjct:    2 IRAALVLLVRIYQRLVSPLLPPACRFYPSCSAYAVTALQRHGALRGSWLTVRRLCRCHPFHAGG 65          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y1687_OCEIH (UPF0161 protein OB1687 OS=Oceanobacillus iheyensis GN=OB1687 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.690e-11
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 2
Query:  260 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            + ++ FY+  ISP  P SCR+ PTCSEY ++A K++G  KG +LT  R+ +C+P    G
Sbjct:    6 IGLIKFYRSAISPFTPSSCRFYPTCSEYGLEAIKRFGAFKGGILTIKRISKCHPFHPGG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y3697_STRGG (UPF0161 protein SGR_3697 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=SGR_3697 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 2
Query:  260 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            L+++  Y+  ISPL+   CRY P+CS Y   +  ++G +KGT LTAWR+ RCNP    G
Sbjct:    6 LALIKLYQWTISPLLGPVCRYYPSCSHYGYTSIDRHGAIKGTALTAWRILRCNPWSPGG 64          
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: Y3113_CLAMS (UPF0161 protein CMS3113 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=CMS3113 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 25/61 (40.98%), Postives = 42/61 (68.85%), Query Frame = 2
Query:  254 AALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            AA++++  Y+R +SPL    CRY P+CS Y ++A +++G+++G  L  WR+CRC+P    G
Sbjct:   15 AAIAVIGLYRRIVSPLYGDVCRYYPSCSAYGLEAVQEHGLIRGGGLAVWRVCRCHPWAEGG 75          
The following BLAST results are available for this feature:
BLAST of CF510142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
Y3237_LARHH2.826e-1146.77UPF0161 protein LHK_03237 OS=Laribacter hongkongen... [more]
Y2594_SYNJA2.826e-1145.61UPF0161 protein CYA_2594 OS=Synechococcus sp. (str... [more]
Y2130_PELLD2.826e-1140.32UPF0161 protein Plut_2130 OS=Pelodictyon luteolum ... [more]
Y605_LACS13.690e-1141.94UPF0161 protein LSL_0605 OS=Lactobacillus salivari... [more]
Y5058_DESHY3.690e-1150.00UPF0161 protein DSY5058 OS=Desulfitobacterium hafn... [more]
Y4515_ANAD23.690e-1145.31UPF0161 protein A2cp1_4515 OS=Anaeromyxobacter deh... [more]
Y4496_ANASK3.690e-1145.31UPF0161 protein AnaeK_4496 OS=Anaeromyxobacter sp.... [more]
Y1687_OCEIH3.690e-1144.07UPF0161 protein OB1687 OS=Oceanobacillus iheyensis... [more]
Y3697_STRGG4.820e-1145.76UPF0161 protein SGR_3697 OS=Streptomyces griseus s... [more]
Y3113_CLAMS4.820e-1140.98UPF0161 protein CMS3113 OS=Clavibacter michiganens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-657 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510142 ID=CF510142; Name=CF510142; organism=Citrus sinensis; type=EST; length=437bp
GAAGACTTGGACAGTTGAAATGGCGGTTTCACTTAACTGCCATAACAAAC
CCTTGTCCACCTCGCTTAATTTCCAGAACCCTAATTTCAGTTCATCCAAA
TATCACCGTAAAAACCAAAACCATATTTCCGCTTTTCGCCTTCCCGCGAA
AACCAAAACGCACCGTATCGTAACCGTCCGTGGATTGGGCACTGACTCGG
ATCCGAACACTCCACAAGAAGATGATAAAGAGGTCAATAGTTTGGGAGTC
AGAGCTGCACTATCTATGCTGAGCTTTTACAAAAGGGAAATCTCGCCACT
GATGCCGAGGAGTTGTAGATATGTGCCAACATGTAGTGAGTACTCAATGC
AAGCGTACAAGAAATATGGAGTTGTAAAGGGCACTGTCTTGACTGCTTGG
CGTCTCTGTCGCTGCAATCCTCTTGGTGGGTCCGGAT
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