CF510142

Overview
NameCF510142
Unique NameCF510142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: YIDD_SHISS (UPF0161 protein yidD OS=Shigella sonnei (strain Ss046) GN=yidD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.295e-11
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:  239 SLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            S G R  ++++  Y+R ISPL+   CR+ PTCS Y ++A +++GV+KG+ LT  R+ +C+PL   G
Sbjct:    6 SPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEALRRFGVIKGSWLTVKRVLKCHPLHPGG 71
[Close]
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: YIDD_SHIFL (UPF0161 protein yidD OS=Shigella flexneri GN=yidD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.295e-11
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:  239 SLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            S G R  ++++  Y+R ISPL+   CR+ PTCS Y ++A +++GV+KG+ LT  R+ +C+PL   G
Sbjct:    6 SPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEALRRFGVIKGSWLTVKRVLKCHPLHPGG 71
[Close]
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: YIDD_SHIDS (UPF0161 protein yidD OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yidD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.295e-11
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:  239 SLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            S G R  ++++  Y+R ISPL+   CR+ PTCS Y ++A +++GV+KG+ LT  R+ +C+PL   G
Sbjct:    6 SPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEALRRFGVIKGSWLTVKRVLKCHPLHPGG 71
[Close]
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: YIDD_SHIBS (UPF0161 protein yidD OS=Shigella boydii serotype 4 (strain Sb227) GN=yidD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.295e-11
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:  239 SLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            S G R  ++++  Y+R ISPL+   CR+ PTCS Y ++A +++GV+KG+ LT  R+ +C+PL   G
Sbjct:    6 SPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEALRRFGVIKGSWLTVKRVLKCHPLHPGG 71
[Close]
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: YIDD_SALTY (UPF0161 protein yidD OS=Salmonella typhimurium GN=yidD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.295e-11
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:  239 SLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            S G R  ++++  Y+R ISPL+   CR+ PTCS Y ++A +++GV+KG+ LT  R+ +C+PL   G
Sbjct:    6 SPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEALRRFGVIKGSWLTVKRVLKCHPLHPGG 71
[Close]
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: YIDD_SALTI (UPF0161 protein yidD OS=Salmonella typhi GN=yidD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.295e-11
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:  239 SLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            S G R  ++++  Y+R ISPL+   CR+ PTCS Y ++A +++GV+KG+ LT  R+ +C+PL   G
Sbjct:    6 SPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEALRRFGVIKGSWLTVKRVLKCHPLHPGG 71
[Close]
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: YIDD_SALPK (UPF0161 protein yidD OS=Salmonella paratyphi A (strain AKU_12601) GN=yidD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.295e-11
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:  239 SLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            S G R  ++++  Y+R ISPL+   CR+ PTCS Y ++A +++GV+KG+ LT  R+ +C+PL   G
Sbjct:    6 SPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEALRRFGVIKGSWLTVKRVLKCHPLHPGG 71
[Close]
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: YIDD_SALPC (UPF0161 protein yidD OS=Salmonella paratyphi C (strain RKS4594) GN=yidD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.295e-11
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:  239 SLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            S G R  ++++  Y+R ISPL+   CR+ PTCS Y ++A +++GV+KG+ LT  R+ +C+PL   G
Sbjct:    6 SPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEALRRFGVIKGSWLTVKRVLKCHPLHPGG 71
[Close]
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: YIDD_SALPA (UPF0161 protein yidD OS=Salmonella paratyphi A GN=yidD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.295e-11
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:  239 SLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            S G R  ++++  Y+R ISPL+   CR+ PTCS Y ++A +++GV+KG+ LT  R+ +C+PL   G
Sbjct:    6 SPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEALRRFGVIKGSWLTVKRVLKCHPLHPGG 71
[Close]
BLAST of CF510142 vs. ExPASy Swiss-Prot
Match: YIDD_SALG2 (UPF0161 protein yidD OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yidD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.295e-11
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:  239 SLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSG 436
            S G R  ++++  Y+R ISPL+   CR+ PTCS Y ++A +++GV+KG+ LT  R+ +C+PL   G
Sbjct:    6 SPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEALRRFGVIKGSWLTVKRVLKCHPLHPGG 71
The following BLAST results are available for this feature:
BLAST of CF510142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
YIDD_SHISS6.295e-1142.42UPF0161 protein yidD OS=Shigella sonnei (strain Ss... [more]
YIDD_SHIFL6.295e-1142.42UPF0161 protein yidD OS=Shigella flexneri GN=yidD ... [more]
YIDD_SHIDS6.295e-1142.42UPF0161 protein yidD OS=Shigella dysenteriae serot... [more]
YIDD_SHIBS6.295e-1142.42UPF0161 protein yidD OS=Shigella boydii serotype 4... [more]
YIDD_SALTY6.295e-1142.42UPF0161 protein yidD OS=Salmonella typhimurium GN=... [more]
YIDD_SALTI6.295e-1142.42UPF0161 protein yidD OS=Salmonella typhi GN=yidD P... [more]
YIDD_SALPK6.295e-1142.42UPF0161 protein yidD OS=Salmonella paratyphi A (st... [more]
YIDD_SALPC6.295e-1142.42UPF0161 protein yidD OS=Salmonella paratyphi C (st... [more]
YIDD_SALPA6.295e-1142.42UPF0161 protein yidD OS=Salmonella paratyphi A GN=... [more]
YIDD_SALG26.295e-1142.42UPF0161 protein yidD OS=Salmonella gallinarum (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-657 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510142 ID=CF510142; Name=CF510142; organism=Citrus sinensis; type=EST; length=437bp
GAAGACTTGGACAGTTGAAATGGCGGTTTCACTTAACTGCCATAACAAAC
CCTTGTCCACCTCGCTTAATTTCCAGAACCCTAATTTCAGTTCATCCAAA
TATCACCGTAAAAACCAAAACCATATTTCCGCTTTTCGCCTTCCCGCGAA
AACCAAAACGCACCGTATCGTAACCGTCCGTGGATTGGGCACTGACTCGG
ATCCGAACACTCCACAAGAAGATGATAAAGAGGTCAATAGTTTGGGAGTC
AGAGCTGCACTATCTATGCTGAGCTTTTACAAAAGGGAAATCTCGCCACT
GATGCCGAGGAGTTGTAGATATGTGCCAACATGTAGTGAGTACTCAATGC
AAGCGTACAAGAAATATGGAGTTGTAAAGGGCACTGTCTTGACTGCTTGG
CGTCTCTGTCGCTGCAATCCTCTTGGTGGGTCCGGAT
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