CF510144

Overview
NameCF510144
Unique NameCF510144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510144 vs. ExPASy Swiss-Prot
Match: CHSY_ARATH (Chalcone synthase OS=Arabidopsis thaliana GN=CHS PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 4.123e-62
Identity = 114/122 (93.44%), Postives = 120/122 (98.36%), Query Frame = 2
Query:    5 RQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALF 370
            RQDIVVVEVPKLGKEAA KAIKEWGQPKSKITH++FCTTSGVDMPGADYQLTKL+GLRPSVKR MMYQQGCFAGGTVLR+AKDLAENN+GARVLVVCSEITAVTFRGP+DTHLDSLVGQALF
Sbjct:   99 RQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRIAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALF 220          
BLAST of CF510144 vs. ExPASy Swiss-Prot
Match: CHSB_SOLTU (Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 4.123e-62
Identity = 115/124 (92.74%), Postives = 120/124 (96.77%), Query Frame = 2
Query:    2 ARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFG 373
            ARQDIVVVEVPKLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPG DYQL KL+GLRPSVKR MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+++HLDSLVGQALFG
Sbjct:   93 ARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGCDYQLAKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSESHLDSLVGQALFG 216          
BLAST of CF510144 vs. ExPASy Swiss-Prot
Match: CHSY_PINST (Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.385e-62
Identity = 113/124 (91.13%), Postives = 122/124 (98.39%), Query Frame = 2
Query:    2 ARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFG 373
            ARQD+VVVEVP+LGKEAA KAIKEWGQPKSKITH+IFCTTSGVDMPGADYQ+TKL+GLRPSVKR MMYQQGCFAGGTVLR+AKDLAENN+GARVLVVCSEITAVTFRGP+DTHLDS+VGQALFG
Sbjct:   98 ARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQMTKLLGLRPSVKRVMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFG 221          
BLAST of CF510144 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.385e-62
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 2
Query:    2 ARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFG 373
            ARQD+VVVEVPKLGKEAATKAIKEWG PKSKITHL+FCTTSGVDMPGADYQLTKL+GLRPSVKR MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP + HLDSLVGQALFG
Sbjct:   99 ARQDLVVVEVPKLGKEAATKAIKEWGFPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPNEGHLDSLVGQALFG 222          
BLAST of CF510144 vs. ExPASy Swiss-Prot
Match: CHS2_PEA (Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.385e-62
Identity = 114/124 (91.94%), Postives = 120/124 (96.77%), Query Frame = 2
Query:    2 ARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFG 373
            ARQD+VVVEVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTV RLAKDLAENNK ARVLVVCSE+TAVTFRGP+DTHLDSLVGQALFG
Sbjct:   93 ARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVFRLAKDLAENNKNARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFG 216          
BLAST of CF510144 vs. ExPASy Swiss-Prot
Match: CHSY_ONOVI (Chalcone synthase OS=Onobrychis viciifolia GN=CHS PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 7.033e-62
Identity = 114/124 (91.94%), Postives = 120/124 (96.77%), Query Frame = 2
Query:    2 ARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFG 373
            ARQD+ VVEVP+LGKEAA KAIKEWGQPKSKITHLI CTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALFG
Sbjct:   93 ARQDMFVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPHVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFG 216          
BLAST of CF510144 vs. ExPASy Swiss-Prot
Match: CHSY_CHRAE (Chalcone synthase OS=Chrysosplenium americanum GN=CHS PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 9.186e-62
Identity = 114/124 (91.94%), Postives = 120/124 (96.77%), Query Frame = 2
Query:    2 ARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFG 373
            ARQD+VVVE+ KLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPGADYQLTKL+GLRPSVKR MMYQQGCF GGTVLRLAKDLAENN+GARVLVVCSEITAVTFRGP+DTHLDSLVGQALFG
Sbjct:   96 ARQDMVVVEIRKLGKEAAVKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFPGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFG 219          
BLAST of CF510144 vs. ExPASy Swiss-Prot
Match: CHSA_SOLTU (Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.200e-61
Identity = 114/124 (91.94%), Postives = 119/124 (95.97%), Query Frame = 2
Query:    2 ARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFG 373
            ARQDIVVVEVPKLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPG DYQL KL+GLRPSVKR MMYQQGCF GGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+++HLDSLVGQALFG
Sbjct:   93 ARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGCDYQLAKLLGLRPSVKRLMMYQQGCFVGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSESHLDSLVGQALFG 216          
BLAST of CF510144 vs. ExPASy Swiss-Prot
Match: CHS6_IPOBA (Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DII PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.200e-61
Identity = 113/124 (91.13%), Postives = 119/124 (95.97%), Query Frame = 2
Query:    2 ARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFG 373
            ARQDI VVEVPKLGKEAA  AIKEWGQPKSKITH++FCTTSGVDMPGADYQLTKL+GLRPSVKR MMYQQGCFAGGTVLRLAKDLAENNKGARVL+VCSEIT VTFRGP++THLDSLVGQALFG
Sbjct:   93 ARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVGQALFG 216          
BLAST of CF510144 vs. ExPASy Swiss-Prot
Match: CHS4_IPOBA (Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF4 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.200e-61
Identity = 113/124 (91.13%), Postives = 119/124 (95.97%), Query Frame = 2
Query:    2 ARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFG 373
            ARQDI VVEVPKLGKEAA  AIKEWGQPKSKITH++FCTTSGVDMPGADYQLTKL+GLRPSVKR MMYQQGCFAGGTVLRLAKDLAENNKGARVL+VCSEIT VTFRGP++THLDSLVGQALFG
Sbjct:   93 ARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVGQALFG 216          
The following BLAST results are available for this feature:
BLAST of CF510144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSY_ARATH4.123e-6293.44Chalcone synthase OS=Arabidopsis thaliana GN=CHS P... [more]
CHSB_SOLTU4.123e-6292.74Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B... [more]
CHSY_PINST5.385e-6291.13Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=... [more]
CHS3_GERHY5.385e-6293.55Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
CHS2_PEA5.385e-6291.94Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 ... [more]
CHSY_ONOVI7.033e-6291.94Chalcone synthase OS=Onobrychis viciifolia GN=CHS ... [more]
CHSY_CHRAE9.186e-6291.94Chalcone synthase OS=Chrysosplenium americanum GN=... [more]
CHSA_SOLTU1.200e-6191.94Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A... [more]
CHS6_IPOBA1.200e-6191.13Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DI... [more]
CHS4_IPOBA1.200e-6191.13Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-659 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510144 ID=CF510144; Name=CF510144; organism=Citrus sinensis; type=EST; length=374bp
CGCACGTCAAGACATTGTGGTGGTCGAAGTGCCGAAGCTCGGGAAAGAAG
CTGCTACAAAGGCCATCAAAGAATGGGGCCAGCCCAAGTCTAAGATCACC
CACCTCATCTTCTGCACCACCTCCGGCGTCGACATGCCCGGCGCCGACTA
CCAGCTCACCAAACTGATCGGCCTGCGCCCCTCCGTCAAGCGCTTCATGA
TGTACCAACAAGGATGTTTCGCCGGCGGCACTGTTCTTCGCCTCGCTAAA
GACTTGGCTGAGAACAACAAGGGCGCTCGCGTTCTTGTTGTCTGTTCGGA
GATCACGGCAGTCACTTTCCGCGGCCCTGCCGATACTCATCTTGATTCTC
TTGTGGGCCAGGCTTTGTTCGGTG
back to top