CF510157 | Citrus Genome Database

Overview


Name	CF510157
Unique Name	CF510157
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	331

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15_QUESU (60S ribosomal protein L15 OS=Quercus suber GN=RPL15 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.149e-24
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 3

Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY +V+E+ R+KQSDV+RFL RVRCWEYRQ   I R +RP+RPDKARRLGYKAKQ
Sbjct:    1 MGAYKYVAEMERRKQSDVLRFLLRVRCWEYRQLNVIHRASRPSRPDKARRLGYKAKQ 57

HSP 2 Score: 40.817 bits (94), Expect = 8.149e-24
Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = 1

Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRP PKG  +GKP NQG+ QLK
Sbjct:   71 RKRPAPKGATFGKPVNQGINQLK 93

[Close]

BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15_NEUCR (60S ribosomal protein L15 OS=Neurospora crassa GN=rpl-15 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.147e-23
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 3

Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGA  ++ EL +KKQSDV+RFL RVRCWE RQ   I R +RP+RPDKARRLGYKAKQ
Sbjct:    1 MGALKYLEELQKKKQSDVVRFLLRVRCWELRQLNVIHRASRPSRPDKARRLGYKAKQ 57

HSP 2 Score: 45.0542 bits (105), Expect = 5.147e-23
Identity = 19/23 (82.61%), Postives = 20/23 (86.96%), Query Frame = 1

Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RK+PVPKG  YGKPTNQGV QLK
Sbjct:   71 RKKPVPKGATYGKPTNQGVNQLK 93

[Close]

BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15_CHITE (60S ribosomal protein L15 OS=Chironomus tentans GN=RpL15 PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 8.715e-23
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 3

Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY +V EL+RKKQSDV+R+L RVRCW+YRQ   + R  RP+RPDKARRLGYKAKQ
Sbjct:    1 MGAYRYVQELYRKKQSDVLRYLLRVRCWQYRQLTKLHRAPRPSRPDKARRLGYKAKQ 57

HSP 2 Score: 36.5798 bits (83), Expect = 8.715e-23
Identity = 16/23 (69.57%), Postives = 17/23 (73.91%), Query Frame = 1

Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPV KG  YGKP + GV QLK
Sbjct:   71 RKRPVHKGCTYGKPKSHGVNQLK 93

[Close]

BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15_ANOGA (60S ribosomal protein L15 OS=Anopheles gambiae GN=RpL15 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.134e-22
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 3

Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY +V EL+RKKQSDVMR+L R+R W+YRQ     R  RP+RPDKARRLGYKAKQ
Sbjct:    1 MGAYRYVQELYRKKQSDVMRYLLRIRVWQYRQMTRFHRAPRPSRPDKARRLGYKAKQ 57

HSP 2 Score: 40.0466 bits (92), Expect = 1.134e-22
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 1

Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKG  YGKP + GV QLK
Sbjct:   71 RKRPVPKGCTYGKPKSHGVNQLK 93

[Close]

BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15_ASPNG (60S ribosomal protein L15 OS=Aspergillus niger GN=rpl15 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.134e-22
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 3

Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGA  +V E+ +KKQSDV+RFL RVRCWE RQ  +I R +RP+RPDKARRLGYKAKQ
Sbjct:    1 MGALKYVEEIQKKKQSDVIRFLLRVRCWELRQLNAIHRASRPSRPDKARRLGYKAKQ 57

HSP 2 Score: 42.3578 bits (98), Expect = 1.134e-22
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 1

Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRP PKG  YGKPTN G+ QLK
Sbjct:   71 RKRPAPKGATYGKPTNMGINQLK 93

[Close]

BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15_DROME (60S ribosomal protein L15 OS=Drosophila melanogaster GN=RpL15 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-22
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 3

Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY ++ EL+RKKQSDVMR+L R+R W+YRQ   + R  RPTRPDKARRLGY+AKQ
Sbjct:    1 MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQ 57

HSP 2 Score: 40.0466 bits (92), Expect = 1.920e-22
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 1

Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKG  YGKP + GV QLK
Sbjct:   71 RKRPVPKGCTYGKPKSHGVNQLK 93

[Close]

BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15_ORCLI (60S ribosomal protein L15 OS=Orconectes limosus GN=RPL15 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 4.229e-22
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 3

Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY ++ E++RKKQSDVMRFL R+R W+YR    + R  RPTRP+KARRLGYKAKQ
Sbjct:    1 MGAYKYMQEIYRKKQSDVMRFLLRIRAWQYRHLNKLHRAPRPTRPEKARRLGYKAKQ 57

HSP 2 Score: 40.0466 bits (92), Expect = 4.229e-22
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 1

Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKG  YGKP + GV QLK
Sbjct:   71 RKRPVPKGATYGKPKSHGVNQLK 93

[Close]

BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15B_SCHPO (60S ribosomal protein L15-B OS=Schizosaccharomyces pombe GN=rpl15b PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.670e-21
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 3

Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY ++ EL +KKQSDV  FL RVR WEYRQ   I R +RP+RPDKARRLGYKAKQ
Sbjct:    1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQ 57

HSP 2 Score: 39.6614 bits (91), Expect = 2.670e-21
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 1

Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKG  YGKP +QGV  LK
Sbjct:   71 RKRPVPKGQTYGKPVHQGVNHLK 93

[Close]

BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15A_SCHPO (60S ribosomal protein L15-A OS=Schizosaccharomyces pombe GN=rpl15a PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.670e-21
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 3

Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY ++ EL +KKQSDV  FL RVR WEYRQ   I R +RP+RPDKARRLGYKAKQ
Sbjct:    1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQ 57

HSP 2 Score: 39.6614 bits (91), Expect = 2.670e-21
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 1

Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPVPKG  YGKP +QGV  LK
Sbjct:   71 RKRPVPKGQTYGKPVHQGVNHLK 93

[Close]

BLAST of CF510157 vs. ExPASy Swiss-Prot
Match: RL15_CAEEL (60S ribosomal protein L15 OS=Caenorhabditis elegans GN=rpl-15 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.643e-21
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 3

Query:   51 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 221
            MGAY ++ E+WRKKQSD +R+L R+R W YRQ  ++ RV RPTRP+KARRLGY+AKQ
Sbjct:    1 MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQ 57

HSP 2 Score: 33.8834 bits (76), Expect = 7.643e-21
Identity = 15/23 (65.22%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  262 RKRPVPKGIVYGKPTNQGVTQLK 330
            RKRPV KG  YGKP   GV +LK
Sbjct:   71 RKRPVCKGQTYGKPKTHGVNELK 93

The following BLAST results are available for this feature:

BLAST of CF510157 vs. ExPASy Swiss-Prot

BLAST of CF510157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43


Match Name	E-value	Identity	Description
RL15_QUESU	8.149e-24	73.68	60S ribosomal protein L15 OS=Quercus suber GN=RPL1...	[more]
RL15_NEUCR	5.147e-23	70.18	60S ribosomal protein L15 OS=Neurospora crassa GN=...	[more]
RL15_CHITE	8.715e-23	71.93	60S ribosomal protein L15 OS=Chironomus tentans GN...	[more]
RL15_ANOGA	1.134e-22	70.18	60S ribosomal protein L15 OS=Anopheles gambiae GN=...	[more]
RL15_ASPNG	1.134e-22	70.18	60S ribosomal protein L15 OS=Aspergillus niger GN=...	[more]
RL15_DROME	1.920e-22	68.42	60S ribosomal protein L15 OS=Drosophila melanogast...	[more]
RL15_ORCLI	4.229e-22	66.67	60S ribosomal protein L15 OS=Orconectes limosus GN...	[more]
RL15B_SCHPO	2.670e-21	70.18	60S ribosomal protein L15-B OS=Schizosaccharomyces...	[more]
RL15A_SCHPO	2.670e-21	70.18	60S ribosomal protein L15-A OS=Schizosaccharomyces...	[more]
RL15_CAEEL	7.643e-21	64.91	60S ribosomal protein L15 OS=Caenorhabditis elegan...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_125000-672 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_H02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF510157 ID=CF510157; Name=CF510157; organism=Citrus sinensis; type=EST; length=331bp
GAAAACCCTAGACGCACGGATACTGCGCATCTCAGCTCAGCTCAGAGCCA
ATGGGGGCTTACACGTTCGTGTCGGAGCTATGGAGGAAGAAGCAGTCAGA
TGTGATGAGGTTCTTGCAGAGGGTGAGGTGTTGGGAGTACCGCCAACATC
CATCTATTGTTAGGGTCACCCGTCCCACTCGACCTGACAAGGCTCGACGC
TTGGGTTACAAGGCCAAGCAGGGTTATGTTGCTTATCGTGTGCGGGTAAG
GCGCGGTGGTCCGGAAGAGGCCTGTTCCCAAGGGCATTGTGTATGGTAAA
CCCACAAACCAGGGTGTTACTCAACTGAAGT