CF510159

Overview
NameCF510159
Unique NameCF510159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length316
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF510159 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 9.644e-12
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 2 
Query:   83 NGVVEKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSY 208
            N   E    FDP+APPPF++ EIR  IPKHCWVK+P RSLSY
Sbjct:   13 NSFNEMEFEFDPSAPPPFRLAEIRNVIPKHCWVKDPLRSLSY 54

HSP 2 Score: 26.9498 bits (58), Expect = 9.644e-12
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 3 
Query:  258 HFNTWFFWPLYW 293
            H ++W F+PLYW
Sbjct:   71 HLDSWLFYPLYW 82
The following BLAST results are available for this feature:
BLAST of CF510159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FAD3E_TOBAC9.644e-1264.29Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-674 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510159 ID=CF510159; Name=CF510159; organism=Citrus sinensis; type=EST; length=316bp
AGAAAGCTCATTTCACTTCTCGGTTTCTTTGCTTGCTGCTGCAATGGAGA
AAGAAAGAAAGCTCAAGAATGAAGTGAATGCCAATGGGGTTGTTGAGAAA
GGAGATTCCTTTGACCCAGCAGCTCCTCCTCCATTCAAGATTGGCGAGAT
CCGTGCTGCCATTCCAAAGCATTGCTGGGTCAAGAATCCATGGAGGTCTT
TGAGCTATTGTACTCAGAGATTTGCTTGTGGTTCTTGCATTGCTAGCTGC
TGCTACTCACTTCAACACTTGGTTCTTTTGGCCTCTCTATTGGGGTTGCT
CAAGGAACCATTGTTT
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