CF510178

Overview
NameCF510178
Unique NameCF510178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: R51A2_MAIZE (DNA repair protein RAD51 homolog B OS=Zea mays GN=RAD51B PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.091e-37
Identity = 75/128 (58.59%), Postives = 92/128 (71.88%), Query Frame = 1 
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE +GEFRSGKTQL HTLCV  QLP +  GG GK  YID EGTFRP RI+ IA+RFG++   VL+N+ YARAY  +HQ  LLL  A+ M E  F L++VDS  AL+R DF+GRGEL+ RQ  L +
Sbjct:  121 GSITEMYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRILQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMVVDSATALYRTDFSGRGELSARQMHLAK 248
[Close]
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_USTMA (DNA repair protein RAD51 OS=Ustilago maydis GN=RAD51 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.038e-36
Identity = 73/128 (57.03%), Postives = 94/128 (73.44%), Query Frame = 1 
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE +GEFR+GK+QL HTL V  QLP +M GG GK  YIDTE TFRP R++ +AERFG++   VLDN+ YARAY  +HQ  LL+  +A M+E  F LLIVDS+ +L+R DF+GRGEL+ RQ  L +
Sbjct:  120 GSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLYIDTENTFRPTRLLAVAERFGLNGEEVLDNVAYARAYNADHQLQLLMQASAMMAESRFSLLIVDSLTSLYRTDFSGRGELSARQMHLAK 247
[Close]
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_SOLLC (DNA repair protein RAD51 homolog OS=Solanum lycopersicum GN=RAD51 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.943e-36
Identity = 73/128 (57.03%), Postives = 91/128 (71.09%), Query Frame = 1 
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE +GEFR GKTQL HTLCV  QLP +  GG GK  YID EGTFRP R++ IA+R+G++   VL+N+ YARAY  +HQ  LLL  A+ M E  F L+IVDS  AL+R DF+GRGEL+ RQ  L +
Sbjct:  123 GSITEIYGEFRCGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGPDVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAK 250
[Close]
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RA51B_XENLA (DNA repair protein RAD51 homolog B OS=Xenopus laevis GN=rad51-B PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.943e-36
Identity = 72/128 (56.25%), Postives = 92/128 (71.88%), Query Frame = 1 
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE FGEFR+GKTQL HTL V  QLP +  GG GK  YIDTEGTFRP+R++ +AER+G+    VLDN+ YARA+  +HQ  LL   +A M+E  + LLIVDS  AL+R D++GRGEL+ RQ  L +
Sbjct:  117 GSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 244
[Close]
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RA51A_XENLA (DNA repair protein RAD51 homolog A OS=Xenopus laevis GN=rad51-A PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.943e-36
Identity = 72/128 (56.25%), Postives = 92/128 (71.88%), Query Frame = 1 
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE FGEFR+GKTQL HTL V  QLP +  GG GK  YIDTEGTFRP+R++ +AER+G+    VLDN+ YARA+  +HQ  LL   +A M+E  + LLIVDS  AL+R D++GRGEL+ RQ  L +
Sbjct:  117 GSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 244
[Close]
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: R51A1_MAIZE (DNA repair protein RAD51 homolog A OS=Zea mays GN=RAD51A PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 3.943e-36
Identity = 72/128 (56.25%), Postives = 91/128 (71.09%), Query Frame = 1 
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE +GEFRSGKTQL HT CV  QLP +  GG GK  YID EGTFRP R++ IA+RFG++   VL+N+ YARAY  +HQ  LLL  A+ M E  F L++VDS  AL+R DF+GRGEL+ RQ  + +
Sbjct:  121 GSITEIYGEFRSGKTQLCHTPCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRFALMVVDSATALYRTDFSGRGELSARQMHMAK 248
[Close]
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_SCHPO (DNA repair protein rhp51 OS=Schizosaccharomyces pombe GN=rhp51 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.149e-36
Identity = 73/128 (57.03%), Postives = 92/128 (71.88%), Query Frame = 1 
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE FGEFR+GK+Q+ HTL V  QLP +M GG GK  YIDTEGTFRP R++ +A+R+G++   VLDN+ YARAY  +HQ  LL   A  MSE  F LL+VDS  AL+R DF+GRGEL+ RQ  L +
Sbjct:  142 GSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLYIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSESRFSLLVVDSCTALYRTDFSGRGELSARQMHLAR 269
[Close]
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_CHICK (DNA repair protein RAD51 homolog 1 OS=Gallus gallus GN=RAD51A PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.147e-35
Identity = 71/128 (55.47%), Postives = 91/128 (71.09%), Query Frame = 1 
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE FGEFR+GKTQL HTL V  QLP +  GG GK  YIDTEGTFRP+R++ +AER+G+    VLDN+ YAR +  +HQ  LL   +A M+E  + LLIVDS  AL+R D++GRGEL+ RQ  L +
Sbjct:  120 GSITELFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 247
[Close]
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_HUMAN (DNA repair protein RAD51 homolog 1 OS=Homo sapiens GN=RAD51 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.498e-35
Identity = 71/128 (55.47%), Postives = 91/128 (71.09%), Query Frame = 1 
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE FGEFR+GKTQ+ HTL V  QLP +  GG GK  YIDTEGTFRP+R++ +AER+G+    VLDN+ YARA+  +HQ  LL   +A M E  + LLIVDS  AL+R D++GRGEL+ RQ  L +
Sbjct:  120 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 247
[Close]
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_RABIT (DNA repair protein RAD51 homolog 1 OS=Oryctolagus cuniculus GN=RAD51 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.359e-35
Identity = 70/128 (54.69%), Postives = 90/128 (70.31%), Query Frame = 1 
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE FGEFR+GKTQ+ HTL V  QLP +  GG GK  YIDTEGTFRP+R++ +AER+G+    VLDN+ YAR +  +HQ  LL   +A M E  + LLIVDS  AL+R D++GRGEL+ RQ  L +
Sbjct:  120 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 247
The following BLAST results are available for this feature:
BLAST of CF510178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
R51A2_MAIZE2.091e-3758.59DNA repair protein RAD51 homolog B OS=Zea mays GN=... [more]
RAD51_USTMA1.038e-3657.03DNA repair protein RAD51 OS=Ustilago maydis GN=RAD... [more]
RAD51_SOLLC3.943e-3657.03DNA repair protein RAD51 homolog OS=Solanum lycope... [more]
RA51B_XENLA3.943e-3656.25DNA repair protein RAD51 homolog B OS=Xenopus laev... [more]
RA51A_XENLA3.943e-3656.25DNA repair protein RAD51 homolog A OS=Xenopus laev... [more]
R51A1_MAIZE3.943e-3656.25DNA repair protein RAD51 homolog A OS=Zea mays GN=... [more]
RAD51_SCHPO5.149e-3657.03DNA repair protein rhp51 OS=Schizosaccharomyces po... [more]
RAD51_CHICK1.147e-3555.47DNA repair protein RAD51 homolog 1 OS=Gallus gallu... [more]
RAD51_HUMAN1.498e-3555.47DNA repair protein RAD51 homolog 1 OS=Homo sapiens... [more]
RAD51_RABIT4.359e-3554.69DNA repair protein RAD51 homolog 1 OS=Oryctolagus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-693 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510178 ID=CF510178; Name=CF510178; organism=Citrus sinensis; type=EST; length=389bp
GGAGCCACCACAGAAGCTTTTGGGGAGTTCCGGTCTGGGAAAACACAGCT
TGCTCATACCCTATGCGTTTGCACGCAGCTTCCTACAAATATGCGGGGTG
GGAATGGGAAGGTTGCTTACATTGACACTGAAGGAACTTTCCGCCCTGAT
AGGATTGTACCCATAGCTGAAAGATTTGGAATGGACCCAGGAGCTGTCCT
TGACAATATCATTTATGCTCGTGCGTACACATATGAGCATCAGTACAACC
TACTTCTTGGTCTGGCAGCAAAAATGTCTGAAGAACCATTCAGACTTCTG
ATTGTGGATTCAGTGATTGCCCTCTTTCGAGTAGATTTCACAGGAAGAGG
AGAACTTGCAGATCGACAGCAAAAATTGGGACAAATGCT
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