CF510178
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METST (DNA repair and recombination protein radA OS=Methanosphaera stadtmanae (strain DSM 3091) GN=radA PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.905e-24 Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 1 Query: 10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 TE +GEF SGK+Q++H L V TQLP G +G+V +IDTE TFRP+RI IAE FG++ VL I ARA+ HQ + +A K++E +L+I+DS++A FR ++ GR LA RQQKL Q Sbjct: 100 TEVYGEFGSGKSQISHELSVTTQLPVEEGGLDGEVVFIDTENTFRPERIEQIAEGFGLNIEEVLKKIHVARAFNSSHQ----ILMADKINELIQSGVNIKLIIIDSLMAHFRAEYVGRESLATRQQKLNQ 225
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_AERPE (DNA repair and recombination protein radA OS=Aeropyrum pernix GN=radA PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.905e-24 Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 1 Query: 10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 TE FGEF SGKTQ+ H L V QLP + G GK Y+DTEGTFR +RI +A G+DP V+ NI + RA HQ ++ L + + +L++VDSV + FR +F GR LA RQQ L + Sbjct: 107 TELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYVDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNR 231
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_THEVO (DNA repair and recombination protein radA OS=Thermoplasma volcanium GN=radA PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.316e-23 Identity = 61/127 (48.03%), Postives = 74/127 (58.27%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE FGEF SGKTQ+ H L V +P G + V IDTE TFRP+RI+ +A+ G+DP L I ARAY HQ L E RLLIVDS+ A FR ++ GRG LA+RQQ L + Sbjct: 109 AITEFFGEFGSGKTQIMHQLAVNCTMPKEKGGFDSDVMMIDTENTFRPERIIQMAKSKGLDPDETLKRIHVARAYNSHHQILLAEKAQETAKEFNIRLLIVDSLTAHFRSEYVGRGSLAERQQLLNK 235
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PICTO (DNA repair and recombination protein radA OS=Picrophilus torridus GN=radA PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.718e-23 Identity = 62/126 (49.21%), Postives = 77/126 (61.11%), Query Frame = 1 Query: 10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 TE FGEF SGKTQ+ H L V +P G + V IDTE TFRP+RI+ +A +DP L+ I ARAY HQ LL AA M+ E RLLIVDS+ + FR ++ GRG LA+RQQ L + Sbjct: 110 TEFFGEFGSGKTQIMHQLAVNATMPVEKNGFDSDVLIIDTENTFRPERIIQMARAKDLDPDQTLERIHVARAYNSHHQI-LLAEKAADMAREYKIRLLIVDSLTSHFRSEYVGRGSLAERQQLLNR 234
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METS5 (DNA repair and recombination protein radA OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=radA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.931e-23 Identity = 57/126 (45.24%), Postives = 81/126 (64.29%), Query Frame = 1 Query: 10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 TE FGEF SGKTQ+ H + V QLP G +GK YIDTEGTFR +RI +A G++P VL NI+ RA +HQ ++ L ++++ +L++VDS+ + FR +++GR LA RQQKL + Sbjct: 110 TELFGEFGSGKTQICHQVSVNVQLPPERGGLSGKALYIDTEGTFRTERIKAMASALGLEPKEVLQNIMSIRAINTDHQIAIVEELQDIIAKDNSIKLVVVDSITSHFRAEYSGRENLAVRQQKLNR 235
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_THEAC (DNA repair and recombination protein radA OS=Thermoplasma acidophilum GN=radA PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 3.828e-23 Identity = 61/127 (48.03%), Postives = 73/127 (57.48%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE FGEF SGKTQ+ H L V LP G + V IDTE TFRP+RI+ +A+ G DP L I ARAY HQ L E +LLIVDS+ A FR ++ GRG LA+RQQ L + Sbjct: 109 AITEFFGEFGSGKTQIMHQLAVNCTLPKEKGGFDSDVMMIDTENTFRPERIIQMAKSKGADPDETLKRIHVARAYNSHHQILLAEKAQDTAKEYNIKLLIVDSLTAHFRSEYVGRGSLAERQQLLNK 235
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRHO (DNA repair and recombination protein radA OS=Pyrococcus horikoshii GN=radA PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 3.828e-23 Identity = 60/119 (50.42%), Postives = 76/119 (63.87%), Query Frame = 1 Query: 43 TQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 TQLAHTL V QLP G NG V +IDTE TFRP+RI IA+ G+DP VL +I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LA+RQQKL + Sbjct: 325 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAK 443
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METTH (DNA repair and recombination protein radA OS=Methanobacterium thermoautotrophicum GN=radA PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 3.828e-23 Identity = 63/132 (47.73%), Postives = 81/132 (61.36%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE FGEF SGK+QL+H L V QLP G + + +IDTE TFRP+RI IA F +D VL+ I ARA+ HQ + +A K++E + RL+IVDS+ A FR ++ GR LA RQQKL Q Sbjct: 98 AITEVFGEFGSGKSQLSHELAVTVQLPEERGGLDAEAVFIDTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQ----ILMAEKVNELIQEGKNIRLVIVDSLTAHFRAEYVGREALATRQQKLNQ 225
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METLZ (DNA repair and recombination protein radA OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=radA PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 4.999e-23 Identity = 64/143 (44.76%), Postives = 85/143 (59.44%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGM----------DPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE------PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE +GEF SGK+Q+AH L V QLP + G G YIDTE TFRP+RI +AE + P L NI ARA++ +HQ LL+ A ++S E P +L+I+DS+ +LFR ++ GRG LA RQQKL + Sbjct: 101 AITELYGEFGSGKSQIAHQLAVNCQLPQELGGLGGSCLYIDTENTFRPERIEQMAEGLELADLPEGYVVPTPDEFLANIHVARAHSSDHQM-LLIDAARELSNELTASGLPVKLVIIDSLTSLFRSEYAGRGTLAGRQQKLNR 242
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_IGNH4 (DNA repair and recombination protein radA OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=radA PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.529e-23 Identity = 59/130 (45.38%), Postives = 79/130 (60.77%), Query Frame = 1 Query: 10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGN-----GKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 TE FGEF SGK+QL H V QLP G + K Y+DTEGTFR +RI +A+ G+DP V+DNI Y RA +HQ ++ L + +E +L++VDSV + FR ++ GR LA RQQKL + Sbjct: 109 TEFFGEFGSGKSQLCHQASVNVQLPLEQGGLSEGDKVAKAVYVDTEGTFRWERIEQMAKCLGLDPDQVMDNIYYIRAVNSDHQMAIVEELFNLVPKENVKLIVVDSVTSHFRAEYPGRENLAVRQQKLNK 238 The following BLAST results are available for this feature:
BLAST of CF510178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 76
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Sequences
The
following sequences are available for this feature:
EST sequence >CF510178 ID=CF510178; Name=CF510178; organism=Citrus sinensis; type=EST; length=389bpback to top |