CF510178

Overview
NameCF510178
Unique NameCF510178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METST (DNA repair and recombination protein radA OS=Methanosphaera stadtmanae (strain DSM 3091) GN=radA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.905e-24
Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            TE +GEF SGK+Q++H L V TQLP    G +G+V +IDTE TFRP+RI  IAE FG++   VL  I  ARA+   HQ    + +A K++E        +L+I+DS++A FR ++ GR  LA RQQKL Q
Sbjct:  100 TEVYGEFGSGKSQISHELSVTTQLPVEEGGLDGEVVFIDTENTFRPERIEQIAEGFGLNIEEVLKKIHVARAFNSSHQ----ILMADKINELIQSGVNIKLIIIDSLMAHFRAEYVGRESLATRQQKLNQ 225          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_AERPE (DNA repair and recombination protein radA OS=Aeropyrum pernix GN=radA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.905e-24
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            TE FGEF SGKTQ+ H L V  QLP +  G  GK  Y+DTEGTFR +RI  +A   G+DP  V+ NI + RA    HQ  ++  L   +  +  +L++VDSV + FR +F GR  LA RQQ L +
Sbjct:  107 TELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYVDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNR 231          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_THEVO (DNA repair and recombination protein radA OS=Thermoplasma volcanium GN=radA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.316e-23
Identity = 61/127 (48.03%), Postives = 74/127 (58.27%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE FGEF SGKTQ+ H L V   +P    G +  V  IDTE TFRP+RI+ +A+  G+DP   L  I  ARAY   HQ  L         E   RLLIVDS+ A FR ++ GRG LA+RQQ L +
Sbjct:  109 AITEFFGEFGSGKTQIMHQLAVNCTMPKEKGGFDSDVMMIDTENTFRPERIIQMAKSKGLDPDETLKRIHVARAYNSHHQILLAEKAQETAKEFNIRLLIVDSLTAHFRSEYVGRGSLAERQQLLNK 235          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PICTO (DNA repair and recombination protein radA OS=Picrophilus torridus GN=radA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.718e-23
Identity = 62/126 (49.21%), Postives = 77/126 (61.11%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            TE FGEF SGKTQ+ H L V   +P    G +  V  IDTE TFRP+RI+ +A    +DP   L+ I  ARAY   HQ  LL   AA M+ E   RLLIVDS+ + FR ++ GRG LA+RQQ L +
Sbjct:  110 TEFFGEFGSGKTQIMHQLAVNATMPVEKNGFDSDVLIIDTENTFRPERIIQMARAKDLDPDQTLERIHVARAYNSHHQI-LLAEKAADMAREYKIRLLIVDSLTSHFRSEYVGRGSLAERQQLLNR 234          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METS5 (DNA repair and recombination protein radA OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=radA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.931e-23
Identity = 57/126 (45.24%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            TE FGEF SGKTQ+ H + V  QLP    G +GK  YIDTEGTFR +RI  +A   G++P  VL NI+  RA   +HQ  ++  L   ++++   +L++VDS+ + FR +++GR  LA RQQKL +
Sbjct:  110 TELFGEFGSGKTQICHQVSVNVQLPPERGGLSGKALYIDTEGTFRTERIKAMASALGLEPKEVLQNIMSIRAINTDHQIAIVEELQDIIAKDNSIKLVVVDSITSHFRAEYSGRENLAVRQQKLNR 235          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_THEAC (DNA repair and recombination protein radA OS=Thermoplasma acidophilum GN=radA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.828e-23
Identity = 61/127 (48.03%), Postives = 73/127 (57.48%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE FGEF SGKTQ+ H L V   LP    G +  V  IDTE TFRP+RI+ +A+  G DP   L  I  ARAY   HQ  L         E   +LLIVDS+ A FR ++ GRG LA+RQQ L +
Sbjct:  109 AITEFFGEFGSGKTQIMHQLAVNCTLPKEKGGFDSDVMMIDTENTFRPERIIQMAKSKGADPDETLKRIHVARAYNSHHQILLAEKAQDTAKEYNIKLLIVDSLTAHFRSEYVGRGSLAERQQLLNK 235          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRHO (DNA repair and recombination protein radA OS=Pyrococcus horikoshii GN=radA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.828e-23
Identity = 60/119 (50.42%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   43 TQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            TQLAHTL V  QLP    G NG V +IDTE TFRP+RI  IA+  G+DP  VL +I  ARA+   HQ  L+     K+ E     +P +LLIVDS+ + FR ++ GRG LA+RQQKL +
Sbjct:  325 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAK 443          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METTH (DNA repair and recombination protein radA OS=Methanobacterium thermoautotrophicum GN=radA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.828e-23
Identity = 63/132 (47.73%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE FGEF SGK+QL+H L V  QLP    G + +  +IDTE TFRP+RI  IA  F +D   VL+ I  ARA+   HQ    + +A K++E     +  RL+IVDS+ A FR ++ GR  LA RQQKL Q
Sbjct:   98 AITEVFGEFGSGKSQLSHELAVTVQLPEERGGLDAEAVFIDTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQ----ILMAEKVNELIQEGKNIRLVIVDSLTAHFRAEYVGREALATRQQKLNQ 225          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METLZ (DNA repair and recombination protein radA OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=radA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.999e-23
Identity = 64/143 (44.76%), Postives = 85/143 (59.44%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGM----------DPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE------PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE +GEF SGK+Q+AH L V  QLP  + G  G   YIDTE TFRP+RI  +AE   +           P   L NI  ARA++ +HQ  LL+  A ++S E      P +L+I+DS+ +LFR ++ GRG LA RQQKL +
Sbjct:  101 AITELYGEFGSGKSQIAHQLAVNCQLPQELGGLGGSCLYIDTENTFRPERIEQMAEGLELADLPEGYVVPTPDEFLANIHVARAHSSDHQM-LLIDAARELSNELTASGLPVKLVIIDSLTSLFRSEYAGRGTLAGRQQKLNR 242          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_IGNH4 (DNA repair and recombination protein radA OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=radA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.529e-23
Identity = 59/130 (45.38%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGN-----GKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            TE FGEF SGK+QL H   V  QLP    G +      K  Y+DTEGTFR +RI  +A+  G+DP  V+DNI Y RA   +HQ  ++  L   + +E  +L++VDSV + FR ++ GR  LA RQQKL +
Sbjct:  109 TEFFGEFGSGKSQLCHQASVNVQLPLEQGGLSEGDKVAKAVYVDTEGTFRWERIEQMAKCLGLDPDQVMDNIYYIRAVNSDHQMAIVEELFNLVPKENVKLIVVDSVTSHFRAEYPGRENLAVRQQKLNK 238          
The following BLAST results are available for this feature:
BLAST of CF510178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RADA_METST5.905e-2447.69DNA repair and recombination protein radA OS=Metha... [more]
RADA_AERPE5.905e-2446.40DNA repair and recombination protein radA OS=Aerop... [more]
RADA_THEVO1.316e-2348.03DNA repair and recombination protein radA OS=Therm... [more]
RADA_PICTO1.718e-2349.21DNA repair and recombination protein radA OS=Picro... [more]
RADA_METS52.931e-2345.24DNA repair and recombination protein radA OS=Metal... [more]
RADA_THEAC3.828e-2348.03DNA repair and recombination protein radA OS=Therm... [more]
RADA_PYRHO3.828e-2350.42DNA repair and recombination protein radA OS=Pyroc... [more]
RADA_METTH3.828e-2347.73DNA repair and recombination protein radA OS=Metha... [more]
RADA_METLZ4.999e-2344.76DNA repair and recombination protein radA OS=Metha... [more]
RADA_IGNH46.529e-2345.38DNA repair and recombination protein radA OS=Ignic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-693 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510178 ID=CF510178; Name=CF510178; organism=Citrus sinensis; type=EST; length=389bp
GGAGCCACCACAGAAGCTTTTGGGGAGTTCCGGTCTGGGAAAACACAGCT
TGCTCATACCCTATGCGTTTGCACGCAGCTTCCTACAAATATGCGGGGTG
GGAATGGGAAGGTTGCTTACATTGACACTGAAGGAACTTTCCGCCCTGAT
AGGATTGTACCCATAGCTGAAAGATTTGGAATGGACCCAGGAGCTGTCCT
TGACAATATCATTTATGCTCGTGCGTACACATATGAGCATCAGTACAACC
TACTTCTTGGTCTGGCAGCAAAAATGTCTGAAGAACCATTCAGACTTCTG
ATTGTGGATTCAGTGATTGCCCTCTTTCGAGTAGATTTCACAGGAAGAGG
AGAACTTGCAGATCGACAGCAAAAATTGGGACAAATGCT
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