CF510178
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRKO (DNA repair and recombination protein radA OS=Pyrococcus kodakaraensis GN=radA PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 8.527e-23 Identity = 60/120 (50.00%), Postives = 76/120 (63.33%), Query Frame = 1 Query: 43 TQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKM------SEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 TQLAHTL V Q P G G V +IDTE TFRP+RI IAE G+DP L NI ARA+ HQ LL+ A ++ S+ P +LL+VDS++A FR ++ GRG LA+RQQKL + Sbjct: 632 TQLAHTLAVMVQKPPEEGGLGGSVIWIDTENTFRPERIKQIAENRGLDPEETLKNIYVARAFNSNHQM-LLVEKAEEIIKEKAESDRPVKLLVVDSLMAHFRAEYVGRGTLAERQQKLAK 750
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METJA (DNA repair and recombination protein radA OS=Methanocaldococcus jannaschii GN=radA PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 8.527e-23 Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNG---------KVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 + TE G F SGKTQ+AH CV Q P + + K YIDTEGTFRP+RIV +AE G+D VL+NI ARAY + Q + + E +L+IVDS+ + FR ++ GRG+LA+RQQKLG+ Sbjct: 130 SVTEFAGMFGSGKTQIAHQACVNLQCPERIVADDAIKDEILNEPKAVYIDTEGTFRPERIVQMAEALGLDGNEVLNNIFVARAYNSDMQMLYAENVENLIREGHNIKLVIVDSLTSTFRTEYIGRGKLAERQQKLGR 266
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METS3 (DNA repair and recombination protein radA OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=radA PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.114e-22 Identity = 61/130 (46.92%), Postives = 80/130 (61.54%), Query Frame = 1 Query: 10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 TE FGEF SGK+Q++H L V QLP G +G+ +IDTE TFRP+RI IA F +D VL I ARA+ HQ + +A K++E +L+IVDS++A FR ++ GR LA RQQKL Q Sbjct: 100 TEVFGEFGSGKSQISHELAVTVQLPPEKGGLDGECVFIDTENTFRPERIEQIANGFELDIDEVLQKIHVARAFNSSHQ----ILMAEKINELIQQGNNIKLVIVDSLMAHFRAEYVGRESLAVRQQKLNQ 225
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METMJ (DNA repair and recombination protein radA OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=radA PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 7.219e-22 Identity = 61/138 (44.20%), Postives = 82/138 (59.42%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRI------VPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL-----LGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE +GEF SGK+QL H + V QLP + G G V Y+DTE TFRP+RI +P G + VL+ I ARA++ +HQ LL L + S+ P RL ++DS+ +LFR ++ GRG LA RQQKL + Sbjct: 101 AITEVYGEFGSGKSQLVHQMAVNAQLPEELGGLGGGVIYVDTENTFRPERIEQMLNGLPEEAEIG-EIEEVLERIHVARAHSSDHQMLLLETARELANDLRTSDYPVRLFVIDSLTSLFRSEYAGRGTLAPRQQKLNR 237
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METM6 (DNA repair and recombination protein radA OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=radA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 3.583e-21 Identity = 61/142 (42.96%), Postives = 82/142 (57.75%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG----------NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKM-----SEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 + TE G + SGKTQ+ H CV Q+ + N K YIDTEGTFRP+R+V +AE G+D VLDN ARAY + Q + A K+ S +L+I+DS+ + FR +FTGRG+LA+RQQKLG+ Sbjct: 99 SVTEFAGMYGSGKTQIMHQSCVNLQIAGKIYADLEGVVEEELENPKAVYIDTEGTFRPERVVQMAEGLGIDGQLVLDNTFVARAYNSDMQ----MLFAEKIEDLIKSGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGR 236
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METM5 (DNA repair and recombination protein radA OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=radA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 3.583e-21 Identity = 60/142 (42.25%), Postives = 82/142 (57.75%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG----------NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 + TE G + SGKTQ+ H CV Q+ + N K YIDTEGTFRP+R+V +AE G+D VLDN ARAY + Q + A K+ + +L+I+DS+ + FR +FTGRG+LA+RQQKLG+ Sbjct: 99 SVTEFAGMYGSGKTQIMHQTCVNLQMAEKIFADLEGVVEEEMENPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYNSDMQ----MLFAEKIEDLIKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGR 236
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METVO (DNA repair and recombination protein radA OS=Methanococcus voltae GN=radA PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 7.981e-21 Identity = 58/138 (42.03%), Postives = 79/138 (57.25%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNM----------RGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 + TE G F SGKTQ+ H CV Q P + K YIDTEGTFRP+RI+ +AE G+D VLDN ARAY + Q + + E +L+++DS+ + FR ++TGRG+LA+RQQKLG+ Sbjct: 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGR 236
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METM7 (DNA repair and recombination protein radA OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=radA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.361e-20 Identity = 59/142 (41.55%), Postives = 82/142 (57.75%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG----------NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 + TE G + SGKTQ+ H CV Q+ + + K YIDTEGTFRP+R+V +AE G+D VLDN ARAY + Q + A K+ + +L+I+DS+ + FR +FTGRG+LA+RQQKLG+ Sbjct: 99 SVTEFAGMYGSGKTQIMHQSCVNLQIAGKIYADLEGVVEEELEHPKAVYIDTEGTFRPERVVQMAEGLGIDGQLVLDNTFVARAYNSDMQ----MLFAEKIEDLIKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGR 236
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METMP (DNA repair and recombination protein radA OS=Methanococcus maripaludis GN=radA PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 1.778e-20 Identity = 60/142 (42.25%), Postives = 81/142 (57.04%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG----------NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 + TE G F SGKTQ+ H CV Q+ + K YIDTEGTFRP+R+V +AE G+D VLDN ARAY + Q + A K+ + +L+I+DS+ + FR +FTGRG+LA+RQQKLG+ Sbjct: 99 SVTEFAGMFGSGKTQIMHQTCVNLQIREKIFADLEGVVEEELEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYNSDMQ----MLFAEKIEDLIKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGR 236
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_HALSA (DNA repair and recombination protein radA OS=Halobacterium salinarium GN=radA PE=3 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 3.707e-18 Identity = 58/155 (37.42%), Postives = 79/155 (50.97%), Query Frame = 1 Query: 10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP------------------------GAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE------PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 TE +GEF +GK+Q+ H L V QLPT G +G+ +ID+E TFRP+RI + + A LD I A+ + HQ LL A +++ E P R+L VDS+ A FR ++ GRGELADRQQKL + Sbjct: 103 TEVYGEFGAGKSQVTHQLAVNVQLPTEYGGLHGRAVFIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGSTDDEDTLTELVDAFLDKIHVAKGFNSNHQM-LLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGRGELADRQQKLNK 256 The following BLAST results are available for this feature:
BLAST of CF510178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 76
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Sequences
The
following sequences are available for this feature:
EST sequence >CF510178 ID=CF510178; Name=CF510178; organism=Citrus sinensis; type=EST; length=389bpback to top |