CF510178

Overview
NameCF510178
Unique NameCF510178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRKO (DNA repair and recombination protein radA OS=Pyrococcus kodakaraensis GN=radA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.527e-23
Identity = 60/120 (50.00%), Postives = 76/120 (63.33%), Query Frame = 1
Query:   43 TQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKM------SEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            TQLAHTL V  Q P    G  G V +IDTE TFRP+RI  IAE  G+DP   L NI  ARA+   HQ  LL+  A ++      S+ P +LL+VDS++A FR ++ GRG LA+RQQKL +
Sbjct:  632 TQLAHTLAVMVQKPPEEGGLGGSVIWIDTENTFRPERIKQIAENRGLDPEETLKNIYVARAFNSNHQM-LLVEKAEEIIKEKAESDRPVKLLVVDSLMAHFRAEYVGRGTLAERQQKLAK 750          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METJA (DNA repair and recombination protein radA OS=Methanocaldococcus jannaschii GN=radA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.527e-23
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNG---------KVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            + TE  G F SGKTQ+AH  CV  Q P  +   +          K  YIDTEGTFRP+RIV +AE  G+D   VL+NI  ARAY  + Q      +   + E    +L+IVDS+ + FR ++ GRG+LA+RQQKLG+
Sbjct:  130 SVTEFAGMFGSGKTQIAHQACVNLQCPERIVADDAIKDEILNEPKAVYIDTEGTFRPERIVQMAEALGLDGNEVLNNIFVARAYNSDMQMLYAENVENLIREGHNIKLVIVDSLTSTFRTEYIGRGKLAERQQKLGR 266          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METS3 (DNA repair and recombination protein radA OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=radA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.114e-22
Identity = 61/130 (46.92%), Postives = 80/130 (61.54%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            TE FGEF SGK+Q++H L V  QLP    G +G+  +IDTE TFRP+RI  IA  F +D   VL  I  ARA+   HQ    + +A K++E        +L+IVDS++A FR ++ GR  LA RQQKL Q
Sbjct:  100 TEVFGEFGSGKSQISHELAVTVQLPPEKGGLDGECVFIDTENTFRPERIEQIANGFELDIDEVLQKIHVARAFNSSHQ----ILMAEKINELIQQGNNIKLVIVDSLMAHFRAEYVGRESLAVRQQKLNQ 225          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METMJ (DNA repair and recombination protein radA OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=radA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.219e-22
Identity = 61/138 (44.20%), Postives = 82/138 (59.42%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRI------VPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL-----LGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE +GEF SGK+QL H + V  QLP  + G  G V Y+DTE TFRP+RI      +P     G +   VL+ I  ARA++ +HQ  LL     L    + S+ P RL ++DS+ +LFR ++ GRG LA RQQKL +
Sbjct:  101 AITEVYGEFGSGKSQLVHQMAVNAQLPEELGGLGGGVIYVDTENTFRPERIEQMLNGLPEEAEIG-EIEEVLERIHVARAHSSDHQMLLLETARELANDLRTSDYPVRLFVIDSLTSLFRSEYAGRGTLAPRQQKLNR 237          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METM6 (DNA repair and recombination protein radA OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=radA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.583e-21
Identity = 61/142 (42.96%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG----------NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKM-----SEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            + TE  G + SGKTQ+ H  CV  Q+   +             N K  YIDTEGTFRP+R+V +AE  G+D   VLDN   ARAY  + Q    +  A K+     S    +L+I+DS+ + FR +FTGRG+LA+RQQKLG+
Sbjct:   99 SVTEFAGMYGSGKTQIMHQSCVNLQIAGKIYADLEGVVEEELENPKAVYIDTEGTFRPERVVQMAEGLGIDGQLVLDNTFVARAYNSDMQ----MLFAEKIEDLIKSGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGR 236          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METM5 (DNA repair and recombination protein radA OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=radA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.583e-21
Identity = 60/142 (42.25%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG----------NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            + TE  G + SGKTQ+ H  CV  Q+   +             N K  YIDTEGTFRP+R+V +AE  G+D   VLDN   ARAY  + Q    +  A K+ +        +L+I+DS+ + FR +FTGRG+LA+RQQKLG+
Sbjct:   99 SVTEFAGMYGSGKTQIMHQTCVNLQMAEKIFADLEGVVEEEMENPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYNSDMQ----MLFAEKIEDLIKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGR 236          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METVO (DNA repair and recombination protein radA OS=Methanococcus voltae GN=radA PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.981e-21
Identity = 58/138 (42.03%), Postives = 79/138 (57.25%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNM----------RGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            + TE  G F SGKTQ+ H  CV  Q P  +               K  YIDTEGTFRP+RI+ +AE  G+D   VLDN   ARAY  + Q      +   + E    +L+++DS+ + FR ++TGRG+LA+RQQKLG+
Sbjct:   99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGR 236          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METM7 (DNA repair and recombination protein radA OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=radA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.361e-20
Identity = 59/142 (41.55%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG----------NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            + TE  G + SGKTQ+ H  CV  Q+   +             + K  YIDTEGTFRP+R+V +AE  G+D   VLDN   ARAY  + Q    +  A K+ +        +L+I+DS+ + FR +FTGRG+LA+RQQKLG+
Sbjct:   99 SVTEFAGMYGSGKTQIMHQSCVNLQIAGKIYADLEGVVEEELEHPKAVYIDTEGTFRPERVVQMAEGLGIDGQLVLDNTFVARAYNSDMQ----MLFAEKIEDLIKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGR 236          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METMP (DNA repair and recombination protein radA OS=Methanococcus maripaludis GN=radA PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.778e-20
Identity = 60/142 (42.25%), Postives = 81/142 (57.04%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGG----------NGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            + TE  G F SGKTQ+ H  CV  Q+   +               K  YIDTEGTFRP+R+V +AE  G+D   VLDN   ARAY  + Q    +  A K+ +        +L+I+DS+ + FR +FTGRG+LA+RQQKLG+
Sbjct:   99 SVTEFAGMFGSGKTQIMHQTCVNLQIREKIFADLEGVVEEELEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYNSDMQ----MLFAEKIEDLIKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGR 236          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_HALSA (DNA repair and recombination protein radA OS=Halobacterium salinarium GN=radA PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.707e-18
Identity = 58/155 (37.42%), Postives = 79/155 (50.97%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP------------------------GAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE------PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            TE +GEF +GK+Q+ H L V  QLPT   G +G+  +ID+E TFRP+RI  +      +                          A LD I  A+ +   HQ  LL   A +++ E      P R+L VDS+ A FR ++ GRGELADRQQKL +
Sbjct:  103 TEVYGEFGAGKSQVTHQLAVNVQLPTEYGGLHGRAVFIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGSTDDEDTLTELVDAFLDKIHVAKGFNSNHQM-LLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRAEYVGRGELADRQQKLNK 256          
The following BLAST results are available for this feature:
BLAST of CF510178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RADA_PYRKO8.527e-2350.00DNA repair and recombination protein radA OS=Pyroc... [more]
RADA_METJA8.527e-2344.53DNA repair and recombination protein radA OS=Metha... [more]
RADA_METS31.114e-2246.92DNA repair and recombination protein radA OS=Metha... [more]
RADA_METMJ7.219e-2244.20DNA repair and recombination protein radA OS=Metha... [more]
RADA_METM63.583e-2142.96DNA repair and recombination protein radA OS=Metha... [more]
RADA_METM53.583e-2142.25DNA repair and recombination protein radA OS=Metha... [more]
RADA_METVO7.981e-2142.03DNA repair and recombination protein radA OS=Metha... [more]
RADA_METM71.361e-2041.55DNA repair and recombination protein radA OS=Metha... [more]
RADA_METMP1.778e-2042.25DNA repair and recombination protein radA OS=Metha... [more]
RADA_HALSA3.707e-1837.42DNA repair and recombination protein radA OS=Halob... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-693 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510178 ID=CF510178; Name=CF510178; organism=Citrus sinensis; type=EST; length=389bp
GGAGCCACCACAGAAGCTTTTGGGGAGTTCCGGTCTGGGAAAACACAGCT
TGCTCATACCCTATGCGTTTGCACGCAGCTTCCTACAAATATGCGGGGTG
GGAATGGGAAGGTTGCTTACATTGACACTGAAGGAACTTTCCGCCCTGAT
AGGATTGTACCCATAGCTGAAAGATTTGGAATGGACCCAGGAGCTGTCCT
TGACAATATCATTTATGCTCGTGCGTACACATATGAGCATCAGTACAACC
TACTTCTTGGTCTGGCAGCAAAAATGTCTGAAGAACCATTCAGACTTCTG
ATTGTGGATTCAGTGATTGCCCTCTTTCGAGTAGATTTCACAGGAAGAGG
AGAACTTGCAGATCGACAGCAAAAATTGGGACAAATGCT
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