CF510185

Overview
NameCF510185
Unique NameCF510185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length217
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CF510185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
UBIQ_PONPY5.455e-2298.04Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY5.455e-2298.04Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG5.455e-2298.04Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PANTR5.455e-2298.04Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA5.455e-2298.04Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE5.455e-2298.04Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE5.455e-2298.04Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA5.455e-2298.04Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_ICTPU5.455e-2298.04Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN5.455e-2298.04Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-700 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510185 ID=CF510185; Name=CF510185; organism=Citrus sinensis; type=EST; length=217bp
GTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAGCAGAG
GCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGGACCTTGGCCGATT
ACAACATCCAAAAAGAATCCACCTTGCATCTTGTCCTCAGGCTCCGTGGT
GGCATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGA
GGTGGAGAGTTCAGATA
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