CF510185

Overview
NameCF510185
Unique NameCF510185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length217
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   26 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.125e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.125e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   26 VKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CF510185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
UBIQ_CHICK5.455e-2298.04Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA5.455e-2298.04Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO5.455e-2298.04Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA5.455e-2298.04Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR5.455e-2298.04Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_CAEEL5.455e-2298.04Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_BOVIN5.455e-2298.04Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_ACECL5.455e-2298.04Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_TRYBB7.125e-2298.04Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_EUPEU7.125e-2298.04Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-700 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510185 ID=CF510185; Name=CF510185; organism=Citrus sinensis; type=EST; length=217bp
GTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAGCAGAG
GCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGGACCTTGGCCGATT
ACAACATCCAAAAAGAATCCACCTTGCATCTTGTCCTCAGGCTCCGTGGT
GGCATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGA
GGTGGAGAGTTCAGATA
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