CF510185

Overview
NameCF510185
Unique NameCF510185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length217
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.073e-21
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.029e-20
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.344e-20
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 147
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   15 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.659e-18
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   26 VKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.779e-18
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   26 LKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.544e-13
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 162
            +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:   26 IKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.896e-13
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   26 VKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.896e-13
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:   26 IKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.031e-12
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   26 IKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.031e-12
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   26 IKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CF510185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
UBIQ_NEUCR2.073e-2196.08Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_LEITA1.029e-2094.12Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE1.344e-2097.96Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVOP3.659e-1884.31Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC4.779e-1882.35Ubiquitin-like protein OS=Autographa californica n... [more]
NEDD8_DROME3.544e-1361.11NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
RUB1_DESAN7.896e-1366.67NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
NEDD8_CAEEL7.896e-1364.71NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB2_ORYSJ1.031e-1264.71NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ1.031e-1264.71NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-700 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510185 ID=CF510185; Name=CF510185; organism=Citrus sinensis; type=EST; length=217bp
GTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAGCAGAG
GCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGGACCTTGGCCGATT
ACAACATCCAAAAAGAATCCACCTTGCATCTTGTCCTCAGGCTCCGTGGT
GGCATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGA
GGTGGAGAGTTCAGATA
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