CF510185

Overview
NameCF510185
Unique NameCF510185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length217
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.031e-12
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   26 IKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.118e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 156
            +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG+
Sbjct:   26 IKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.684e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   26 IKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.684e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   26 IKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.684e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   26 IKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.684e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   26 IKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.684e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   26 IKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.540e-11
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 156
            +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:   26 IKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.317e-11
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:   26 IKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76          
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.652e-11
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:   26 IKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CF510185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RUB1_ARATH1.031e-1264.71NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
RUB2_ARATH5.118e-1261.54NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_RAT6.684e-1260.78NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT6.684e-1260.78NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE6.684e-1260.78NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN6.684e-1260.78NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN6.684e-1260.78NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
NEDD8_DICDI2.540e-1155.77NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
RUB3_ORYSJ3.317e-1158.82NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
UBL1_SCHPO9.652e-1154.90Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-700 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510185 ID=CF510185; Name=CF510185; organism=Citrus sinensis; type=EST; length=217bp
GTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAGCAGAG
GCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGGACCTTGGCCGATT
ACAACATCCAAAAAGAATCCACCTTGCATCTTGTCCTCAGGCTCCGTGGT
GGCATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGA
GGTGGAGAGTTCAGATA
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