CF510189

Overview
NameCF510189
Unique NameCF510189
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length285
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510189 vs. ExPASy Swiss-Prot
Match: PP1B_CHICK (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Gallus gallus GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 5.623e-27
Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 1
Query:   19 VNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRK 285
            + +P+ +CGDIHGQ+ DL++LF+ GG  PE NY+F+GD+VDRG  SLE   +LL  K +YP N  LLRGNHE   + ++YGFYDEC+R+
Sbjct:   54 LEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRR 142          
BLAST of CF510189 vs. ExPASy Swiss-Prot
Match: PP1B_CANFA (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Canis familiaris GN=PPP1CB PE=2 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 5.623e-27
Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 1
Query:   19 VNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRK 285
            + +P+ +CGDIHGQ+ DL++LF+ GG  PE NY+F+GD+VDRG  SLE   +LL  K +YP N  LLRGNHE   + ++YGFYDEC+R+
Sbjct:   54 LEAPLKICGDIHGQYADLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRR 142          
BLAST of CF510189 vs. ExPASy Swiss-Prot
Match: PP1B_BOVIN (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Bos taurus GN=PPP1CB PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.623e-27
Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 1
Query:   19 VNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRK 285
            + +P+ +CGDIHGQ+ DL++LF+ GG  PE NY+F+GD+VDRG  SLE   +LL  K +YP N  LLRGNHE   + ++YGFYDEC+R+
Sbjct:   54 LEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRR 142          
BLAST of CF510189 vs. ExPASy Swiss-Prot
Match: PP12_SCHPO (Serine/threonine-protein phosphatase PP1-2 OS=Schizosaccharomyces pombe GN=sds21 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.623e-27
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 1
Query:   19 VNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRK 285
            + +P+ +CGDIHGQ+ DL++LF+ GG+ P+ NY+F+GD+VDRG  SLEV  +L   K +YP N  LLRGNHE   + ++YGFYDEC+R+
Sbjct:   51 LEAPLKICGDIHGQYSDLLRLFEYGGYPPDANYLFLGDYVDRGKQSLEVICLLFAYKIKYPENFFLLRGNHEFASINRIYGFYDECKRR 139          
BLAST of CF510189 vs. ExPASy Swiss-Prot
Match: PP13_DROME (Serine/threonine-protein phosphatase alpha-3 isoform OS=Drosophila melanogaster GN=Pp1-13C PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.344e-27
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 1
Query:   19 VNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRK 285
            + +P+ +CGDIHGQ++DL++LF+ GG+ PE NY+F+GD+VDRG  SLE   +LL  K +Y  N  LLRGNHE   + ++YGFYDEC+R+
Sbjct:   53 LEAPLKICGDIHGQYYDLLRLFEYGGYPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYSENFFLLRGNHECASINRIYGFYDECKRR 141          
BLAST of CF510189 vs. ExPASy Swiss-Prot
Match: PP1_BRAOL (Serine/threonine-protein phosphatase PP1 OS=Brassica oleracea GN=PP1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.592e-27
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 1
Query:   19 VNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRK 285
            + +P+ +CGDIHGQ+ DL++LF+ GG  P+ NY+F+GD+VDRG  SLE    LL  K +YP N  LLRGNHE   + ++YGFYDEC+R+
Sbjct:   70 LEAPIKICGDIHGQYSDLLRLFEYGGFPPDANYLFLGDYVDRGKQSLETICFLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRR 158          
BLAST of CF510189 vs. ExPASy Swiss-Prot
Match: PP16_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 6 OS=Arabidopsis thaliana GN=TOPP6 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 48/95 (50.53%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 ESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRK 285
            + N+  + +P+ +CGD+HGQF DL++LF+ GG+ P  NY+F+GD+VDRG  S+E   +LL  K +Y  N  LLRGNHE   + +VYGFYDEC+R+
Sbjct:   46 QPNLLELEAPIKICGDVHGQFPDLLRLFEYGGYPPAANYLFLGDYVDRGKQSIETICLLLAYKVKYKFNFFLLRGNHECASINRVYGFYDECKRR 140          
BLAST of CF510189 vs. ExPASy Swiss-Prot
Match: PP15_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 5 OS=Arabidopsis thaliana GN=TOPP5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   25 SPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRK 285
            +PV +CGDIHGQ+ DL++LF+ GG  P  NY+F+GD+VDRG  SLE   +LL  K +YP N  LLRGNHE   + ++YGFYDEC+R+
Sbjct:   63 APVKICGDIHGQYSDLLRLFEYGGFPPAANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRR 149          
BLAST of CF510189 vs. ExPASy Swiss-Prot
Match: PP12_DROME (Serine/threonine-protein phosphatase alpha-2 isoform OS=Drosophila melanogaster GN=Pp1-87B PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 1
Query:   19 VNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRK 285
            + +P+ +CGDIHGQ++DL++LF+ GG  PE+NY+F+GD+VDRG  SLE   +LL  K +Y  N  LLRGNHE   + ++YGFYDEC+R+
Sbjct:   53 LEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYSENFFLLRGNHECASINRIYGFYDECKRR 141          
BLAST of CF510189 vs. ExPASy Swiss-Prot
Match: PP11_DROME (Serine/threonine-protein phosphatase alpha-1 isoform OS=Drosophila melanogaster GN=Pp1alpha-96A PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 1
Query:   19 VNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRK 285
            + +P+ +CGDIHGQ++DL++LF+ GG  PE+NY+F+GD+VDRG  SLE   +LL  K +Y  N  LLRGNHE   + ++YGFYDEC+R+
Sbjct:   53 LEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYAENFFLLRGNHECASINRIYGFYDECKRR 141          
The following BLAST results are available for this feature:
BLAST of CF510189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP1B_CHICK5.623e-2755.06Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_CANFA5.623e-2755.06Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_BOVIN5.623e-2755.06Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP12_SCHPO5.623e-2753.93Serine/threonine-protein phosphatase PP1-2 OS=Schi... [more]
PP13_DROME7.344e-2753.93Serine/threonine-protein phosphatase alpha-3 isofo... [more]
PP1_BRAOL9.592e-2753.93Serine/threonine-protein phosphatase PP1 OS=Brassi... [more]
PP16_ARATH1.253e-2650.53Serine/threonine-protein phosphatase PP1 isozyme 6... [more]
PP15_ARATH1.253e-2656.32Serine/threonine-protein phosphatase PP1 isozyme 5... [more]
PP12_DROME1.253e-2653.93Serine/threonine-protein phosphatase alpha-2 isofo... [more]
PP11_DROME1.253e-2653.93Serine/threonine-protein phosphatase alpha-1 isofo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-704 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510189 ID=CF510189; Name=CF510189; organism=Citrus sinensis; type=EST; length=285bp
GAGTCCAATGTGCAGCCTGTTAACAGTCCGGTCACTGTCTGTGGTGATAT
TCATGGCCAGTTTCATGACCTAATGAAACTTTTTCAAACAGGAGGTCATG
TACCAGAGACAAATTACATATTTATGGGTGATTTCGTTGATCGGGGTTAC
AATAGTCTTGAAGTTTTCACCATTCTTTTGCTTCTTAAGGCAAGATACCC
GGCAAATATTACTCTTTTACGTGGAAATCATGAAAGCAGACAACTGACCC
AGGTATATGGATTTTATGATGAGTGCCAGAGGAAG
back to top