CF510214

Overview
NameCF510214
Unique NameCF510214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.208e-21
Identity = 45/72 (62.50%), Postives = 64/72 (88.89%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYER 347
            +GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL++FST+G+L+EY+ +S +   +ERY++
Sbjct:   16 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNS-VRGTIERYKK 86          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.108e-21
Identity = 43/72 (59.72%), Postives = 63/72 (87.50%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYER 347
            MGRG++++KRIENK +RQVTF KRR+GLLKKA+E+++LCDAE+ALIVFS++G+L+E+S  +     +ERY++
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKK 72          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.108e-21
Identity = 45/72 (62.50%), Postives = 64/72 (88.89%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYER 347
            +GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL++FST+G+L+EY+ +S +   +ERY++
Sbjct:   16 IGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNS-VRGTIERYKK 86          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.108e-21
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERY 341
            MGRG++++KRIEN  +RQVTFSKRRSGLLKKA E+SVLCDAEVA+IVFS  GKLFEYS+   M++ L RY
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTG-MKQTLSRY 69          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.108e-21
Identity = 46/72 (63.89%), Postives = 62/72 (86.11%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYER 347
            M RG+ ++KRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVALI+FS +GKL+E+S+ S + + +ERY++
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQK 72          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.059e-20
Identity = 45/72 (62.50%), Postives = 64/72 (88.89%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYER 347
            +GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL+VFS +G+L+EY+ +S ++  +ERY++
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNS-VKATIERYKK 87          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.383e-20
Identity = 46/73 (63.01%), Postives = 62/73 (84.93%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            M RGR +LKRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVALIVFS +G+L+E+++   +++ ++RY+ Y
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAY 73          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.383e-20
Identity = 46/73 (63.01%), Postives = 62/73 (84.93%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            M RGR +LKRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVALIVFS +G+L+E+++   +++ ++RY+ Y
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAY 73          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.024e-20
Identity = 42/72 (58.33%), Postives = 61/72 (84.72%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSC-MERILERYE 344
            MGRG++++KRIEN  NRQVTFSKRR GLLKKA+E++VLCDA V +++FS+ GK+FEY + +C +  ++E+Y+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQ 72          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.024e-20
Identity = 43/70 (61.43%), Postives = 59/70 (84.29%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERY 341
            M RG++QLKRIEN ++RQVTF KRR+GLLKKA E+SVLCDAE+ +++FS +GKLFE +T   ME ++++Y
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKY 70          
The following BLAST results are available for this feature:
BLAST of CF510214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AGL1_ARATH6.208e-2162.50Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
MAD21_ORYSJ8.108e-2159.72MADS-box transcription factor 21 OS=Oryza sativa s... [more]
AGL5_ARATH8.108e-2162.50Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AGL15_ARATH8.108e-2171.43Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
AGL14_ARATH8.108e-2163.89Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
AG_SOLLC1.059e-2062.50Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
MAD56_ORYSJ1.383e-2063.01MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD56_ORYSI1.383e-2063.01MADS-box transcription factor 56 OS=Oryza sativa s... [more]
M17_MAIZE4.024e-2058.33MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
AGL12_ARATH4.024e-2061.43Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-729 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510214 ID=CF510214; Name=CF510214; organism=Citrus sinensis; type=EST; length=352bp
CAGCACACTACTCACTACCTGCTCTAATCTCTGTTCTATAAAAGTACAGA
GATTAGAGAGATACCCAGAAGAAGCCTGCAAGTTTCTTTAGTGGAGAATT
GCCTGGTGATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGC
AGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAG
CGAAGGTCTGGTTTATTGAAAAAAGCCCATGAGATCTCTGTGCTTTGTGA
CGCTGAAGTTGCTTTGATCGTCTTCTCCACTAAAGGCAAACTCTTTGAAT
ACTCTACTGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTAT
TG
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