CF510246

Overview
NameCF510246
Unique NameCF510246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.225e-13
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 2
Query:   62 KLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPEL 337
            ++  + L    L GEIPP +  ++ L  L+LD NELTGTLP  +S   NL  + L NN L G +P ++  L NL  L + NNSF G+IP  L
Sbjct:  415 RVTKIALSRKNLRGEIPPGINYMEALTELWLDDNELTGTLPD-MSKLVNLKIMHLENNQLSGSLPPYLAHLPNLQELSIENNSFKGKIPSAL 505          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: Y5332_ARATH (Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.089e-13
Identity = 47/110 (42.73%), Postives = 61/110 (55.45%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSL-GSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIP 328
            LHL+   L G I  S+   LS L+ L L  N + G  P  L  ++ L  L LDFNE +G LP+ LS+   L  + LSNN   G IP+ IG+L+ L  L L+ N F G IP
Sbjct:   70 LHLAATGLRGDIELSIIARLSNLRFLILSSNNISGTFPTTLQALKNLTELKLDFNEFSGPLPSDLSSWERLQVLDLSNNRFNGSIPSSIGKLTLLHSLNLAYNKFSGEIP 179          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.089e-13
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = 2
Query:   11 SFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYG 319
            S N + GT+PS L  L+KL+ + +  N + G IP  LGNI +L  L L  N+LTG +P ++S+  +LN+ ++S N+L G +PT + Q       K +++SF G
Sbjct:  278 SHNRIRGTLPSELSKLTKLRKMDISGNSVSGHIPETLGNISSLIHLDLSQNKLTGEIPISISDLESLNFFNVSYNNLSGPVPTLLSQ-------KFNSSSFVG 373          

HSP 2 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRI 325
            L L  N L G+IP SLG +  L+ ++L+ N+L G IP  LG    L+TL L  N L+  +P  L++ + L  ++LS N L G+IP  + + S+L  L L +N+  G I
Sbjct:  130 LSLHDNNLGGSIPMSLGLIPNLRGVQLFNNRLTGSIPASLGVSHFLQTLDLSNNLLSEIIPPNLADSSKLLRLNLSFNSLSGQIPVSLSRSSSLQFLALDHNNLSGPI 237          

HSP 3 Score: 66.2402 bits (160), Expect = 5.690e-11
Identity = 45/112 (40.18%), Postives = 56/112 (50.00%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPEL 337
            + L +  L G I   +G L  L+ L L  N L G IP  LG I  L  + L  N LTG++PA+L     L  + LSNN L   IP  +   S L  L LS NS  G+IP  L
Sbjct:  106 IQLPWKSLGGRISEKIGQLQALRKLSLHDNNLGGSIPMSLGLIPNLRGVQLFNNRLTGSIPASLGVSHFLQTLDLSNNLLSEIIPPNLADSSKLLRLNLSFNSLSGQIPVSL 217          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: Y5020_ARATH (Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.729e-13
Identity = 45/121 (37.19%), Postives = 64/121 (52.89%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPE---------LGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPEL 337
            + LS N  +G IP S  + + L+ L L  N L G IP           L +   +E L L  N LTG LP  +     +  ++L+NN L GE+P+ + +LS L  L LSNN+F G+IP +L
Sbjct:  416 IDLSSNKFSGFIPVSFFTFASLRSLNLSRNNLEGPIPFRGSRASELLVLNSYPQMELLDLSTNSLTGMLPGDIGTMEKIKVLNLANNKLSGELPSDLNKLSGLLFLDLSNNTFKGQIPNKL 536          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.729e-13
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   89 NQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPELG 340
            + + G + PELG I  L+ L L  N L GT+P  + N  NL  + L NNHL G IP  IG LS + I+ L +N   G++P ELG
Sbjct:   79 SSIKGFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMIINLQSNGLTGKLPAELG 162          

HSP 2 Score: 65.855 bits (159), Expect = 7.431e-11
Identity = 36/108 (33.33%), Postives = 61/108 (56.48%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRI 325
            +++S + + G +   LG ++ LQ+L L  N L G IP E+GN++ L+ L L  N L G +PA + + + +  I+L +N L G++P  +G L  L  L +  N   G +
Sbjct:   74 INISASSIKGFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMIINLQSNGLTGKLPAELGNLKYLRELHIDRNRLQGSL 181          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.729e-13
Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAI--LKLSNNSFYGRIPPEL 337
            L  S N L G +P SL  +  LQ + L  N+L+GE+P     +  LETL    N+L+G LP + +N T+L  + L +N   G+    I  L NLAI  L + +N F G IP EL
Sbjct:  119 LDFSENELDGNVPYSLSQMKNLQSINLGQNKLNGELPDMFQKLSKLETLDFSLNKLSGKLPQSFANLTSLKKLHLQDNRFTGD----INVLRNLAIDDLNVEDNQFEGWIPNEL 228          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.729e-13
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 2
Query:   23 LTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIP 328
            L+G +   LG L  LQ L+L+ N + GEIP ELG++  L +L L  N ++G +P++L     L ++ L+NN L GEIP  +  +  L +L +SNN   G IP
Sbjct:   87 LSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKLRFLRLNNNSLSGEIPMTLTSV-QLQVLDISNNRLSGDIP 187          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: Y5694_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.655e-13
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 2
Query:   23 LTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPELG 340
            L+G I  S+  L  L  L L LN  +  IP +L    TLETL L  N + GT+P  +S  ++L  I  S+NH+ G IP  +G L NL +L L +N   G +PP +G
Sbjct:   87 LSGEISDSICDLPYLTHLDLSLNFFNQPIPLQLSRCVTLETLNLSSNLIWGTIPDQISEFSSLKVIDFSSNHVEGMIPEDLGLLFNLQVLNLGSNLLTGIVPPAIG 192          

HSP 2 Score: 72.7886 bits (177), Expect = 6.079e-13
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLS-NNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIP 328
            L+LS N + GTIP  +   S L+ +    N + G IP +LG +  L+ L L  N LTG +P A+   + L  + LS N++L  EIP+++G+L  L  L L  + F+G IP
Sbjct:  128 LNLSSNLIWGTIPDQISEFSSLKVIDFSSNHVEGMIPEDLGLLFNLQVLNLGSNLLTGIVPPAIGKLSELVVLDLSENSYLVSEIPSFLGKLDKLEQLLLHRSGFHGEIP 237          

HSP 3 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 46/115 (40.00%), Postives = 60/115 (52.17%), Query Frame = 2
Query:    2 LHLSFN-YLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALS-NCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPELG 340
            L LS N YL   IPS LG L KL+ L L  +  HGEIP     + +L TL L  N L+G +P +L  +  NL  + +S N L G  P+ I     L  L L +N F G +P  +G
Sbjct:  200 LDLSENSYLVSEIPSFLGKLDKLEQLLLHRSGFHGEIPTSFVGLTSLRTLDLSLNNLSGEIPRSLGPSLKNLVSLDVSQNKLSGSFPSGICSGKRLINLSLHSNFFEGSLPNSIG 314          

HSP 4 Score: 69.707 bits (169), Expect = 5.146e-12
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLG-SLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIP 328
            L LS N L+G IP SLG SL  L  L +  N+L G  P  + + + L  L L  N   G+LP ++  C +L  + + NN   GE P  + +L  + I++  NN F G++P
Sbjct:  249 LDLSLNNLSGEIPRSLGPSLKNLVSLDVSQNKLSGSFPSGICSGKRLINLSLHSNFFEGSLPNSIGECLSLERLQVQNNGFSGEFPVVLWKLPRIKIIRADNNRFTGQVP 358          

HSP 5 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 35/110 (31.82%), Postives = 57/110 (51.82%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPP 331
            L L  N+  G++P+S+G    L+ L++  N   GE P  L  +  ++ +  D N  TG +P ++S  + L  + + NN   GEIP  +G + +L     S N F G +PP
Sbjct:  298 LSLHSNFFEGSLPNSIGECLSLERLQVQNNGFSGEFPVVLWKLPRIKIIRADNNRFTGQVPESVSLASALEQVEIVNNSFSGEIPHGLGLVKSLYKFSASQNRFSGELPP 407          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: Y4294_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.655e-13
Identity = 38/109 (34.86%), Postives = 61/109 (55.96%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIP 328
            L +S N L+G +P+ LGS   LQ L L  N     +P E+G   +L  L L  N  +G +P ++    +L  + +S+N L G +P  + +L++L  L LS+N F G++P
Sbjct:   83 LSMSNNSLSGVLPNDLGSFKSLQFLDLSDNLFSSSLPKEIGRSVSLRNLSLSGNNFSGEIPESMGGLISLQSLDMSSNSLSGPLPKSLTRLNDLLYLNLSSNGFTGKMP 191          

HSP 2 Score: 70.0922 bits (170), Expect = 3.940e-12
Identity = 39/113 (34.51%), Postives = 65/113 (57.52%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGS-LSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPEL 337
            L+LS+N LTG++P  + +   KL+ L +  N L G IP  L ++ TLE + L  N +TG +    S+ + +  + LS+N   G++P   G L+NL +L L+ N+  G +P  +
Sbjct:  415 LNLSYNKLTGSLPERIPTHYPKLRVLDISSNSLEGPIPGALLSMPTLEEIHLQNNGMTGNIGPLPSSGSRIRLLDLSHNRFDGDLPGVFGSLTNLQVLNLAANNLSGSLPSSM 527          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: RPKL_ARATH (Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana GN=At4g34220 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.079e-13
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPELG 340
            L LS N+  G++P S+ + ++LQ + L  N L G++P  + ++  L+ L L  N  TG +P  +S   NL  +SLS N   G+IP+         IL LS+N   G +P +LG
Sbjct:  108 LDLSSNFFNGSLPDSVFNATELQSISLGSNNLSGDLPKSVNSVTNLQLLNLSANAFTGEIPLNISLLKNLTVVSLSKNTFSGDIPS---GFEAAQILDLSSNLLNGSLPKDLG 217          

HSP 2 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIP 328
            L L   +L G+I   L S+  L+ L L  N  +G +P  + N   L+++ L  N L+G LP ++++ TNL  ++LS N   GEIP  I  L NL ++ LS N+F G IP
Sbjct:   84 LVLPNKHLLGSITPDLFSIPYLRILDLSSNFFNGSLPDSVFNATELQSISLGSNNLSGDLPKSVNSVTNLQLLNLSANAFTGEIPLNISLLKNLTVVSLSKNTFSGDIP 192          
The following BLAST results are available for this feature:
BLAST of CF510246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
Y1677_ARATH1.225e-1343.48Probable LRR receptor-like serine/threonine-protei... [more]
Y5332_ARATH2.089e-1342.73Probable inactive receptor kinase At5g53320 OS=Ara... [more]
IMK3_ARATH2.089e-1338.83Probable leucine-rich repeat receptor-like protein... [more]
Y5020_ARATH2.729e-1337.19Probable inactive receptor kinase At5g10020 OS=Ara... [more]
Y1634_ARATH2.729e-1344.05Probable LRR receptor-like serine/threonine-protei... [more]
SRF5_ARATH2.729e-1339.47Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
SERK4_ARATH2.729e-1340.20Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
Y5694_ARATH4.655e-1340.57Probably inactive leucine-rich repeat receptor-lik... [more]
Y4294_ARATH4.655e-1334.86Probable LRR receptor-like serine/threonine-protei... [more]
RPKL_ARATH6.079e-1335.40Receptor protein kinase-like protein At4g34220 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-761 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510246 ID=CF510246; Name=CF510246; organism=Citrus sinensis; type=EST; length=341bp
ACTCCATTTAAGCTTCAACTATCTTACTGGAACTATTCCTTCAAGCTTGG
GGTCTCTCTCCAAACTTCAGGATTTGAAGCTTTGGTTGAATCAGCTCCAT
GGAGAGATCCCACCAGAGCTTGGCAACATTCAGACACTGGAAACTCTGTT
TCTTGACTTTAACGAGTTGACGGGAACCTTGCCTGCTGCTTTGAGCAACT
GCACCAATCTTAATTGGATCTCATTGTCGAATAATCATTTGGGTGGTGAA
ATTCCCACTTGGATTGGCCAGCTTTCGAACCTCGCCATTCTCAAACTCAG
CAACAACTCCTTTTATGGTAGGATCCCTCCGGAGCTTGGAG
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