CF510252

Overview
NameCF510252
Unique NameCF510252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_BURCH (Histidine ammonia-lyase OS=Burkholderia cenocepacia (strain HI2424) GN=hutH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 51/170 (30.00%), Postives = 81/170 (47.65%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL++++ +L G       G     +D       AG     LQ KEGLAL+NGT   + LA   +F   +L   + +  A+  +   G  +  D   H+L+ H GQI+AAA    +L+GS    + +   + D +Q P    Y+LR  PQ +G  ++ +R A   +  E N
Sbjct:  147 PLAHMSAVLLGVGEVFIRGERASALDGLRV---AGLAPLTLQAKEGLALLNGTQASTALALDNMFAIEDLYRTALVAGALSVDAAAGSVKPFDARIHELRGHQGQIDAAASYRELLEGSP---INQSHRDCDKVQDP----YSLRCQPQVMGACLDQMRHAADVLLVEAN 306          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_BURCC (Histidine ammonia-lyase OS=Burkholderia cenocepacia (strain MC0-3) GN=hutH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 51/170 (30.00%), Postives = 81/170 (47.65%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL++++ +L G       G     +D       AG     LQ KEGLAL+NGT   + LA   +F   +L   + +  A+  +   G  +  D   H+L+ H GQI+AAA    +L+GS    + +   + D +Q P    Y+LR  PQ +G  ++ +R A   +  E N
Sbjct:  147 PLAHMSAVLLGVGEVFIRGERASALDGLRV---AGLAPLTLQAKEGLALLNGTQASTALALDNMFAIEDLYRTALVAGALSVDAAAGSVKPFDARIHELRGHQGQIDAAASYRELLEGSP---INQSHRDCDKVQDP----YSLRCQPQVMGACLDQMRHAADVLLVEAN 306          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_BURCA (Histidine ammonia-lyase OS=Burkholderia cenocepacia (strain AU 1054) GN=hutH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 51/170 (30.00%), Postives = 81/170 (47.65%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL++++ +L G       G     +D       AG     LQ KEGLAL+NGT   + LA   +F   +L   + +  A+  +   G  +  D   H+L+ H GQI+AAA    +L+GS    + +   + D +Q P    Y+LR  PQ +G  ++ +R A   +  E N
Sbjct:  147 PLAHMSAVLLGVGEVFIRGERASALDGLRV---AGLAPLTLQAKEGLALLNGTQASTALALDNMFAIEDLYRTALVAGALSVDAAAGSVKPFDARIHELRGHQGQIDAAASYRELLEGSP---INQSHRDCDKVQDP----YSLRCQPQVMGACLDQMRHAADVLLVEAN 306          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_BRASO (Histidine ammonia-lyase OS=Bradyrhizobium sp. (strain ORS278) GN=hutH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 54/175 (30.86%), Postives = 85/175 (48.57%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEAN---NLALLSEILS--AIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL+++  ++ G   +      G ++  +EA    G     L PKEGLAL+NGT   +  A   LF A    N AL++  LS  A  A     +PE        L+ HPGQI A  ++  ++DGS     A +L  ++  ++  QD Y LR  PQ  G  ++++  A +++  E N
Sbjct:  148 PLAHMTAVMIGEGQAFV---EGRLVPGREALAHVGLDPVTLGPKEGLALINGTQFSTAYALAGLFRARDLLNAALVTGALSVDAAMASTAPFRPEI-----QALRGHPGQIAAGRVLTELVDGS-----AIRLSHLEGDER-VQDPYCLRCQPQVAGAALDLLTQAARTLVNEAN 308          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_AGRRK (Histidine ammonia-lyase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=hutH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 55/171 (32.16%), Postives = 85/171 (49.71%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLH-EIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL+++  ++ G   +   G   E +D   A ++AG     L  KEGLAL+NGT V + LA   LF A+  A  + I  A+  +   G         H L+ H GQI+ AA +  +L GS    V ++ H E D   +  QD Y +R  PQ  G  ++++R   +++E E N
Sbjct:  148 PLAHMTAVMMGHGEAFYAG---ERLDGAAALEKAGLTPVVLAAKEGLALINGTQVSTALALAGLFRAHRAAQAALITGAMSTDAAMGSSAPFHPDIHTLRGHQGQIDTAAALRGLLAGS----VIRESHIEGD---ERVQDPYCIRCQPQVDGACLDLLRSVGRTLEIEAN 308          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_ACICJ (Histidine ammonia-lyase OS=Acidiphilium cryptum (strain JF-5) GN=hutH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 50/146 (34.25%), Postives = 72/146 (49.32%), Query Frame = 1
Query:   79 DAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEI-DPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            DA  A  +AG     L PKEGLAL+NGT V + +A   LF A  L   + +  A+  +  +G     D   H L+ H GQ+  AA +  +L GS      +  H I DP     QD Y+LR  PQ +G   +++  A +++  E N
Sbjct:  167 DAAAALGRAGMAPLVLGPKEGLALLNGTQVSTAIALTGLFRAERLCRAALLTGALTTDAARGSDAPFDPRIHALRGHAGQMAVAAALRTLLAGSG----IRDSHRIGDP---RVQDPYSLRCQPQVMGAVFDLLGQAGRTLATEAN 305          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_PSEPF (Histidine ammonia-lyase OS=Pseudomonas fluorescens (strain Pf0-1) GN=hutH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 56/170 (32.94%), Postives = 81/170 (47.65%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL++++ +L G   ++     GE +DA EA K AG     L  KEGLAL+NGT V +  A   LFE  +L   +  L  +  E + G     D   H  +   GQI+AAA    +L   S V+ + +  E        QD Y+LR  PQ +G  +   R A + +  E N
Sbjct:  149 PLAHMSLVLLGEGKARH---KGEWMDATEALKVAGLTPLTLAAKEGLALLNGTQVSTAFALRGLFEGEDLFAGALALGGLTVEAVLGSRSPFDARIHAARGQKGQIDAAAAYRDLLGERSEVSDSHQNCE------KVQDPYSLRCQPQVMGACLTQFRQAAEVLAIEAN 309          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_CHRVO (Histidine ammonia-lyase OS=Chromobacterium violaceum GN=hutH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 50/170 (29.41%), Postives = 79/170 (46.47%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PLS+++ +L G   +   G     +    A + AG     L PKEGLAL+NGT   +  A   LF A +L + + +  ++  E   G     D   H+++ H GQI+AA +   +L  S      +   ++       QD Y+LR  PQ +G  +  IR A + +  E N
Sbjct:  150 PLSHMSAVLIGEGEAFVDGVR---VPGSVAMRSAGLEPITLAPKEGLALLNGTQASTAFALEGLFAAEDLYVSATVAGSLSVEAALGSRTPFDARIHEVRGHQGQIDAARLYRDLLAHSQIEQSHENCGKV-------QDPYSLRCQPQVMGACLTQIRQAAEVLRVEAN 309          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_BURVG (Histidine ammonia-lyase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=hutH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 51/170 (30.00%), Postives = 81/170 (47.65%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL++++ +L G       G     +D       AG     LQ KEGLAL+NGT   + LA   +F   +L   + +  A+  +   G  +  D   H+L+ H GQI+AAA    +L+GS    + +   + D +Q P    Y+LR  PQ +G  ++ +R A   +  E N
Sbjct:  147 PLAHMSAVLLGVGEVFIRGERASALDGLRV---AGLAPLTLQAKEGLALLNGTQASTALALDNMFAIEDLYRTALVAGALSVDAAAGSVKPFDARIHELRGHRGQIDAAASYRELLEGSP---INQSHRDCDKVQDP----YSLRCQPQVMGACLDQMRHAADVLLVEAN 306          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_BRUO2 (Histidine ammonia-lyase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=hutH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 51/170 (30.00%), Postives = 83/170 (48.82%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL+++   + G   +      GE +   +A  +AG     L  KEGLAL+NGT   + LA   LF A+  A  + I  A+  +   G         H+L+ H GQI+A   +  +L+GS+   + +   E D   +  QD Y +R  PQ  G  ++++R A +++E E N
Sbjct:  148 PLAHMTAAMIGEGEAFY---RGERLSGAKALGKAGLKPVVLAAKEGLALINGTQTSTALALAGLFRAHRAARTALITGALSTDAAMGSDAPFHEEIHQLRGHKGQIDAGRALRTLLEGSA---IRRSHLEGD---QRVQDPYCIRCQPQVDGACLDILRQAARTLEIEAN 308          
The following BLAST results are available for this feature:
BLAST of CF510252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
HUTH_BURCH3.073e-1230.00Histidine ammonia-lyase OS=Burkholderia cenocepaci... [more]
HUTH_BURCC3.073e-1230.00Histidine ammonia-lyase OS=Burkholderia cenocepaci... [more]
HUTH_BURCA3.073e-1230.00Histidine ammonia-lyase OS=Burkholderia cenocepaci... [more]
HUTH_BRASO3.073e-1230.86Histidine ammonia-lyase OS=Bradyrhizobium sp. (str... [more]
HUTH_AGRRK3.073e-1232.16Histidine ammonia-lyase OS=Agrobacterium radiobact... [more]
HUTH_ACICJ3.073e-1234.25Histidine ammonia-lyase OS=Acidiphilium cryptum (s... [more]
HUTH_PSEPF4.013e-1232.94Histidine ammonia-lyase OS=Pseudomonas fluorescens... [more]
HUTH_CHRVO4.013e-1229.41Histidine ammonia-lyase OS=Chromobacterium violace... [more]
HUTH_BURVG4.013e-1230.00Histidine ammonia-lyase OS=Burkholderia vietnamien... [more]
HUTH_BRUO24.013e-1230.00Histidine ammonia-lyase OS=Brucella ovis (strain A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_123000-869 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-67_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510252 ID=CF510252; Name=CF510252; organism=Citrus sinensis; type=EST; length=513bp
GTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGCCCAATTCTAA
GGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAAGCCTCTAAAC
AAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTT
GTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGGTTCTGTTTGA
GGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTG
AAGTCATGCAAGGCAAACCTGAGTTCACCGATCACTTGACACACAAATTG
AAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGGAACATATCCT
CGATGGCAGCTCTTATGTTAACGTGGCTAAGAAGTTGCATGAGATTGATC
CTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAACTTCACCACAA
TGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCAAGTCTATTGA
ACGGGAGATCAAC
back to top