CF510252

Overview
NameCF510252
Unique NameCF510252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=ZB8 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.186e-72
Identity = 138/173 (79.77%), Postives = 152/173 (87.86%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGL+TGR N+ A  P+G  ++A EA K AG   GFFELQPKEGLA+VNGTAVGSGLAS VLFEAN LA+L+E+LSA+F EVM GKPE+TDHLTHKLKHHPGQIEAAAIMEHIL+GSSY+  AKKL E+DPL KPKQDRYALRTSPQWLGPQIEVIR ATKSIEREIN
Sbjct:  204 VPLSYIAGLVTGRENAVAVAPDGSKVNAAEAFKIAGIQGGFFELQPKEGLAMVNGTAVGSGLASTVLFEANILAILAEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMKHAKKLGELDPLMKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREIN 376          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.186e-72
Identity = 138/173 (79.77%), Postives = 152/173 (87.86%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGL+TGR N+ A  P+G  ++A EA K AG   GFFELQPKEGLA+VNGTAVGSGLAS VLFEAN LA+L+E+LSA+F EVM GKPE+TDHLTHKLKHHPGQIEAAAIMEHIL+GSSY+  AKKL E+DPL KPKQDRYALRTSPQWLGPQIEVIR ATKSIEREIN
Sbjct:  204 VPLSYIAGLVTGRENAVAVAPDGSKVNAAEAFKIAGIQGGFFELQPKEGLAMVNGTAVGSGLASTVLFEANILAILAEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMKHAKKLGELDPLMKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREIN 376          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 3.816e-71
Identity = 138/173 (79.77%), Postives = 154/173 (89.02%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            +PLSYIA LL GR NSKA GP+GE ++A+EA   AG   GFFEL+PKEGLALVNGTAVGSG+ASMVLFEAN LALL+E+LSA+FAEVMQGKPEFTDHL HKLK+HPGQIEAAAIMEHILDGSSYV  A KL + DPLQKP++DRYAL TSPQWLGPQIE+IRF+TKSIEREIN
Sbjct:  203 IPLSYIAALLIGRRNSKAVGPSGESLNAKEAFHLAGVDGGFFELKPKEGLALVNGTAVGSGVASMVLFEANILALLAEVLSAVFAEVMQGKPEFTDHLIHKLKYHPGQIEAAAIMEHILDGSSYVKNA-KLQQPDPLQKPRKDRYALVTSPQWLGPQIEIIRFSTKSIEREIN 374          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 9.398e-70
Identity = 130/173 (75.14%), Postives = 151/173 (87.28%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGL+TGRPN++A  P+G  +DA EA K AG   GFF L PKEGLA+VNGT+VGS LA+ V+F+AN LA+LSE+LSA+F EVM GKPE+TDHLTHKLKHHPG IEAAAIMEHIL GSS+++ AKK++E+DPL KPKQDRYALRTSPQWLGPQIEVIR ATKSIERE+N
Sbjct:  194 VPLSYIAGLITGRPNAQAISPDGRKVDAAEAFKLAGIEGGFFTLNPKEGLAIVNGTSVGSALAATVMFDANILAVLSEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGSIEAAAIMEHILAGSSFMSHAKKVNEMDPLLKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREVN 366          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PAL1_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=PAL PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 1.772e-68
Identity = 132/174 (75.86%), Postives = 147/174 (84.48%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFG---FFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGL+TGRPNSKA GPNGE ++A+EA + +  G   F    P++GL  +    +  G+ASMVLFEAN LA+LSE+LSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  A+KLHE+DPLQKPKQDRYALRTSPQWLGPQIEVIR ATK IEREIN
Sbjct:  197 VPLSYIAGLITGRPNSKAVGPNGETLNAEEALRLSRSGRRIFRVASPRKGLPSLMAPPLVLGMASMVLFEANVLAVLSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREIN 370          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 5.337e-65
Identity = 124/172 (72.09%), Postives = 144/172 (83.72%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGF-FELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGLLTGRPNS+    +G  +   EA K+ G    FELQPKEGLA+VNGT+VG+ LAS+V F+AN LALLSE++SA+F EVM GKPEFTD LTHKLKHHPGQ+EAAAIME++LDGSSY+  A KLHE++PLQKPKQDRY LRTSPQWLGPQ+E+IR AT  IEREIN
Sbjct:  211 VPLSYIAGLLTGRPNSRVRSRDGIEMSGAEALKKVGLEKPFELQPKEGLAIVNGTSVGAALASIVCFDANVLALLSEVISAMFCEVMNGKPEFTDPLTHKLKHHPGQMEAAAIMEYVLDGSSYMKHAAKLHEMNPLQKPKQDRYGLRTSPQWLGPQVEIIRSATHMIEREIN 382          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PALY_VITVI (Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.049e-36
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 1
Query:  277 TDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            TDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  AKKLHE+DPLQKPKQDRYALRTSPQWLGP IEVIR +TKSIEREIN
Sbjct:    1 TDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEAKKLHEMDPLQKPKQDRYALRTSPQWLGPHIEVIRASTKSIEREIN 79          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PALY_RHORB (Phenylalanine ammonia-lyase OS=Rhodotorula rubra GN=PAL PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.018e-23
Identity = 69/157 (43.95%), Postives = 94/157 (59.87%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKP-EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY-VNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQI 468
            PLSYIA  +TG P+SK    +G+I+ AQEA    G     L PKEGL LVNGTAV + +A++ L +A+ L+LL++ L+A+  E M G    F   L    + HP QIE A  +  +L+GS Y V+   ++   D     +QDRY LR SPQWLGP +
Sbjct:  223 PLSYIAASITGHPDSKVH-VDGKIMSAQEAIALKGLQPVVLGPKEGLGLVNGTAVSASMATLALTDAHVLSLLAQALTALTVEAMVGHAGSFHPFLHDVTRPHPTQIEVARNIRTLLEGSKYAVHHETEVKVKDDEGILRQDRYPLRCSPQWLGPLV 378          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PALY_RHOTO (Phenylalanine ammonia-lyase OS=Rhodosporidium toruloides GN=PAL PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.123e-21
Identity = 66/160 (41.25%), Postives = 94/160 (58.75%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNG---EIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKP-EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY-VNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQI 468
            PLSYIA  ++G P+SK    +    +I+ A+EA          L PKEGL LVNGTAV + +A++ L +A+ L+LLS+ L+A+  E M G    F   L    + HP QIE A  +  +L+GS + V+  +++   D     +QDRY LRTSPQWLGP +
Sbjct:  217 PLSYIAAAISGHPDSKVHVVHEGKEKILYAREAMALFNLEPVVLGPKEGLGLVNGTAVSASMATLALHDAHMLSLLSQSLTAMTVEAMVGHAGSFHPFLHDVTRPHPTQIEVAGNIRKLLEGSRFAVHHEEEVKVKDDEGILRQDRYPLRTSPQWLGPLV 376          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PALY_AMAMU (Phenylalanine ammonia-lyase OS=Amanita muscaria GN=PAL PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.067e-21
Identity = 67/179 (37.43%), Postives = 101/179 (56.42%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKAT-GPNGEIIDAQEASKQA----GFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQG-KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEI---DPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PLSYIAG + G P+ K   GP+   I    +SK          F L+ KE L ++NGTA  + +A++ L EA +L LL+++ +A+  E + G +      +    + HPGQ+E A  + ++LDGS    + +  HE+   D     +QDRY LRTSPQ+LGPQIE I  A +++ +E N
Sbjct:  230 PLSYIAGTIIGNPSIKVYHGPSKSGIRQIGSSKDVLALHNIEPFPLESKEPLGILNGTAFSASVAALALNEAIHLVLLAQVCTAMGTEALIGTRASHAPFIHATARPHPGQVECAENIWNLLDGSKLAQLEE--HEVRLEDDKYTLRQDRYPLRTSPQFLGPQIEDIISAFQTVTQECN 406          
The following BLAST results are available for this feature:
BLAST of CF510252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
PAL2_ORYSJ1.186e-7279.77Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL2_ORYSI1.186e-7279.77Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL3_PHAVU3.816e-7179.77Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PAL1_ORYSJ9.398e-7075.14Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL1_IPOBA1.772e-6875.86Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=... [more]
PALY_PINTA5.337e-6572.09Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]
PALY_VITVI1.049e-3692.41Phenylalanine ammonia-lyase (Fragment) OS=Vitis vi... [more]
PALY_RHORB1.018e-2343.95Phenylalanine ammonia-lyase OS=Rhodotorula rubra G... [more]
PALY_RHOTO2.123e-2141.25Phenylalanine ammonia-lyase OS=Rhodosporidium toru... [more]
PALY_AMAMU8.067e-2137.43Phenylalanine ammonia-lyase OS=Amanita muscaria GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_123000-869 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-67_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510252 ID=CF510252; Name=CF510252; organism=Citrus sinensis; type=EST; length=513bp
GTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGCCCAATTCTAA
GGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAAGCCTCTAAAC
AAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTT
GTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGGTTCTGTTTGA
GGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTG
AAGTCATGCAAGGCAAACCTGAGTTCACCGATCACTTGACACACAAATTG
AAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGGAACATATCCT
CGATGGCAGCTCTTATGTTAACGTGGCTAAGAAGTTGCATGAGATTGATC
CTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAACTTCACCACAA
TGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCAAGTCTATTGA
ACGGGAGATCAAC
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