CF510252

Overview
NameCF510252
Unique NameCF510252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PALY_USTMA (Phenylalanine ammonia-lyase OS=Ustilago maydis GN=PAL1 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.066e-20
Identity = 60/178 (33.71%), Postives = 97/178 (54.49%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGE----IIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGS---SYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PLSY+AG L G+        +G      + A EA +       + +PKE L L+NGTA  + +A +  +EA NLA L+++ +A+  E ++G         H++ + HPGQI++A  +  +L GS    ++   K +   +     +QDRY LRT+ QW+GP +E I  A +S++ EIN
Sbjct:  211 PLSYVAGALAGQRGIYCFVTDGRGQRVKVTADEACRMHKITPVQYEPKEALGLLNGTAFSASVAGLATYEAENLASLTQLTTAMAVEALKGTDASFAPFIHEIARPHPGQIKSAKFIRALLSGSRLAEHLENEKHVLFSEDNGTLRQDRYTLRTASQWVGPGLEDIENAKRSVDIEIN 388          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_IDILO (Histidine ammonia-lyase OS=Idiomarina loihiensis GN=hutH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.172e-17
Identity = 54/150 (36.00%), Postives = 79/150 (52.67%), Query Frame = 1
Query:   64 NGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            NG++++A+E  K AG   FEL PKEGLAL+NGT   + LA   LF        + ++ A   E   G     D   H ++  PGQI+AA ++ H+L  SS   +AK     + +Q P    Y+LR  PQ +G  ++ I  A+  + RE N
Sbjct:  166 NGKVLNAEEGLKIAGIEPFELAPKEGLALLNGTQASTALALAGLFRIERNFHAAIVVGATSVEAAMGSRAPFDERVHAVRGQPGQIKAAEMLRHVLTDSS--EIAKDHENCEKVQDP----YSLRCQPQVMGAVLDQIEHASGILVREAN 309          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_MARMM (Histidine ammonia-lyase OS=Maricaulis maris (strain MCS10) GN=hutH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.206e-16
Identity = 58/170 (34.12%), Postives = 89/170 (52.35%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL++++  L G    +AT   G+ + A +A  +AG    +L PKEGLAL+NGT   + LA   LFE       + +  A+  +  +G     D   H L+ HPGQI+ AA +  +LDGS  ++  +   +I       QD Y LR  PQ +G  ++++R A   +ERE N
Sbjct:  148 PLAHMSAALIGA--GEATW-QGQRMPASDALAKAGLKPVQLGPKEGLALLNGTQTSTALALAGLFEVEAGFQAALVSGALSVDAAKGSVAPFDPRIHSLRGHPGQIDVAAALRGLLDGSGILSSHEGCEKI-------QDPYCLRCQPQVMGAVLDLLRQAGAVLEREAN 307          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_CLOTE (Histidine ammonia-lyase OS=Clostridium tetani GN=hutH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.056e-16
Identity = 50/149 (33.56%), Postives = 80/149 (53.69%), Query Frame = 1
Query:   67 GEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            GEI+  +EA  +AG    EL  KEGLAL+NGT V +   ++ +++A  L  + +I +A+  E ++G  +  D   H ++ H GQ+  A  +  +++GS+YV    +L          QD Y+LR  PQ  G   + I F  + +E EIN
Sbjct:  170 GEIMSGKEAMDKAGIPIIELDAKEGLALINGTQVLTATGALAVYDAIELLKVGDIAAALTIEALRGIKDAFDPRLHVIRAHEGQMATARNILKLIEGSTYVTRQGELR--------VQDAYSLRCVPQIHGASKDTIDFVKEKVEIEIN 310          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_VIBCH (Histidine ammonia-lyase OS=Vibrio cholerae GN=hutH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.686e-16
Identity = 58/170 (34.12%), Postives = 86/170 (50.59%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL++++ +L G   ++    NG+II   EA K AG     L PKEGLAL+NGT   +  A   LF A +L   + +  A+  E   G     D   H+++ H  Q++AA    H+LD SS +  +    E        QD Y+LR  PQ +G  ++ IR A + +E E N
Sbjct:  149 PLAHMSTVLLGEGQARY---NGKIISGLEAMKIAGLEPITLAPKEGLALLNGTQASTAFALEGLFVAEDLFASATVCGAMSVEAALGSRRPFDPRIHRVRGHRTQMDAATAYRHLLDVSSEIGQSHSNCE------KVQDPYSLRCQPQVMGACLQQIRSAAEVLEVEAN 309          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_ALKOO (Histidine ammonia-lyase OS=Alkaliphilus oremlandii (strain OhILAs) GN=hutH PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.814e-16
Identity = 56/170 (32.94%), Postives = 87/170 (51.18%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PLS++  +L G   +   G     +  +EA + AG     L  KEGLAL+NGT V + + ++ +++A NL+ +S+I +A+  E  +G     D   H+++ H GQI  A  +  +L+GS+Y     K  EI       QD Y LR  PQ  G   + I++    I  EIN
Sbjct:  149 PLSHMVLVLIGEGEAIYQGKR---MSGREAMEAAGIRPVVLTSKEGLALINGTQVMTAIGALTVYDAINLSKISDIAAALTIEAQRGIVTAFDKRVHEVRPHAGQISCAENLNRLLEGSTYTT---KQGEI-----KVQDAYTLRCIPQIHGASKDAIQYVENKINIEIN 307          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_SHEPA (Histidine ammonia-lyase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=hutH PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.021e-15
Identity = 59/171 (34.50%), Postives = 83/171 (48.54%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPK-QDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PLS++   L G          G++I A E  + AG    EL  KEGLAL+NGT   + LA   LF A +L   S ++ A+  E   G     D   H  +   GQI++AA+  H+L G S ++       +D +   K QD Y+LR  PQ LG  +  IR A + +  E N
Sbjct:  149 PLSHMCLPLLGEGEMSY---QGQLISAAEGLEIAGLKPIELAAKEGLALLNGTQASTALALEGLFNAEDLFAASSVIGAMSVEAAMGSRSPFDPRIHAARGQKGQIDSAAVFRHLLGGESEIS-------LDHVNCEKVQDPYSLRCQPQVLGACLTQIRHAAEVLGTEAN 309          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_ENT38 (Histidine ammonia-lyase OS=Enterobacter sp. (strain 638) GN=hutH PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.021e-15
Identity = 57/170 (33.53%), Postives = 88/170 (51.76%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL++++ LL G   ++     GE + A++A K+AG     L  KEGLAL+NGT   +  A   LFEA +L   + +  A+  E + G     D   H ++   GQI+AAA+  H+L  +S   +A   H  D +Q P    Y+LR  PQ +G  +  +R A + +  E N
Sbjct:  149 PLAHMSLLLLGEGKARW---QGEWLPAKDALKKAGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAVLGSRSPFDARIHAVRGQRGQIDAAAMYRHVLTDTS--EIADSHHNCDKVQDP----YSLRCQPQVMGACLTQLRHAAEVLLVESN 309          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_RHOS4 (Histidine ammonia-lyase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=hutH PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.969e-15
Identity = 55/170 (32.35%), Postives = 85/170 (50.00%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL+++A ++ G   ++     G  +    A  +AG     L PKEGLAL+NGT   +  A   LFE    A  + ++SA+  + + G         H L+ H GQIEAAA M  +L+GS+   + +   E D   +  QD Y +R  PQ  G  ++V+R A  ++  E N
Sbjct:  147 PLAHMAAVMIGEGEAEV---GGRRLPGAAALAEAGLAPVALGPKEGLALINGTQFSTAYALAGLFEGWRAAQAALVISALSTDAIMGSTAPLRPEIHALRGHAGQIEAAATMRALLEGSA---IRESHREGD---QRVQDPYCIRCQPQVTGAAMDVLRMAAGTLATEAN 307          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_RHOS1 (Histidine ammonia-lyase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=hutH PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.969e-15
Identity = 55/170 (32.35%), Postives = 85/170 (50.00%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL+++A ++ G   ++     G  +    A  +AG     L PKEGLAL+NGT   +  A   LFE    A  + ++SA+  + + G         H L+ H GQIEAAA M  +L+GS+   + +   E D   +  QD Y +R  PQ  G  ++V+R A  ++  E N
Sbjct:  147 PLAHMAAVMIGEGEAEV---GGRRLPGAAALAEAGLAPVALGPKEGLALINGTQFSTAYALAGLFEGWRAAQAALVISALSTDAIMGSTAPLRPEIHALRGHAGQIEAAATMRALLEGSA---IRESHREGD---QRVQDPYCIRCQPQVTGAAMDVLRMAAGTLATEAN 307          
The following BLAST results are available for this feature:
BLAST of CF510252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
PALY_USTMA3.066e-2033.71Phenylalanine ammonia-lyase OS=Ustilago maydis GN=... [more]
HUTH_IDILO3.172e-1736.00Histidine ammonia-lyase OS=Idiomarina loihiensis G... [more]
HUTH_MARMM1.206e-1634.12Histidine ammonia-lyase OS=Maricaulis maris (strai... [more]
HUTH_CLOTE2.056e-1633.56Histidine ammonia-lyase OS=Clostridium tetani GN=h... [more]
HUTH_VIBCH2.686e-1634.12Histidine ammonia-lyase OS=Vibrio cholerae GN=hutH... [more]
HUTH_ALKOO7.814e-1632.94Histidine ammonia-lyase OS=Alkaliphilus oremlandii... [more]
HUTH_SHEPA1.021e-1534.50Histidine ammonia-lyase OS=Shewanella pealeana (st... [more]
HUTH_ENT381.021e-1533.53Histidine ammonia-lyase OS=Enterobacter sp. (strai... [more]
HUTH_RHOS42.969e-1532.35Histidine ammonia-lyase OS=Rhodobacter sphaeroides... [more]
HUTH_RHOS12.969e-1532.35Histidine ammonia-lyase OS=Rhodobacter sphaeroides... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_123000-869 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-67_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510252 ID=CF510252; Name=CF510252; organism=Citrus sinensis; type=EST; length=513bp
GTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGCCCAATTCTAA
GGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAAGCCTCTAAAC
AAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTT
GTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGGTTCTGTTTGA
GGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTG
AAGTCATGCAAGGCAAACCTGAGTTCACCGATCACTTGACACACAAATTG
AAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGGAACATATCCT
CGATGGCAGCTCTTATGTTAACGTGGCTAAGAAGTTGCATGAGATTGATC
CTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAACTTCACCACAA
TGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCAAGTCTATTGA
ACGGGAGATCAAC
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