CF510256

Overview
NameCF510256
Unique NameCF510256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:570..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: PAL1_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=PAL PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 1.466e-91
Identity = 163/184 (88.59%), Postives = 177/184 (96.20%), Query Frame = 1
Query:   10 GLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPT 561
            G+ASMVLFEAN LA+LSE+LSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  A+KLHE+DPLQKPKQDRYALRTSPQWLGPQIEVIR ATK IEREINSVNDNPLIDV+R+KALHGGNFQGTPIGVSMDN+RLA+A+IGKL+FAQFSELVND+YNNGLPSNL+ GRNP+
Sbjct:  258 GMASMVLFEANVLAVLSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVARSKALHGGNFQGTPIGVSMDNSRLALASIGKLLFAQFSELVNDYYNNGLPSNLTAGRNPS 441          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 332.798 bits (852), Expect = 7.276e-91
Identity = 163/187 (87.17%), Postives = 175/187 (93.58%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPT 561
            VGS LAS VL++AN L + SE+ SA+FAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  A  LH+IDPLQKPKQDRYALRTSPQWLGPQIEVIR ATK IEREINSVNDNPLIDVSRNKA+HGGNFQGTPIGV+MDNTRLA+A+IGKLMFAQF+ELVNDFYNNGLPSNLSGGRNP+
Sbjct:  252 VGSALASTVLYDANILVVFSEVASAMFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEALHLHKIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVAMDNTRLALASIGKLMFAQFTELVNDFYNNGLPSNLSGGRNPS 438          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 9.503e-91
Identity = 163/187 (87.17%), Postives = 177/187 (94.65%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPT 561
            VGSG+ASMVLF+AN LA+LSE++SAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL+GSSYV  AKK+HE+DPLQKPKQDRYALRTSPQWLGPQIEVIR ATK IEREINSVNDNPLIDVSRNKALHGGNFQ  PIGV+MDNTRLAIA+IGKL+FAQFSELVND+YNNGLPS L+G  NP+
Sbjct:  258 VGSGMASMVLFDANTLAVLSEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILEGSSYVKEAKKVHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQELPIGVAMDNTRLAIASIGKLIFAQFSELVNDYYNNGLPSILTGSSNPS 444          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 9.204e-86
Identity = 157/187 (83.96%), Postives = 174/187 (93.05%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPT 561
            VGSG+ASMVLFEAN LALL+E+LSA+FAEVMQGKPEFTDHL HKLK+HPGQIEAAAIMEHILDGSSYV  AK L + DPLQKP++DRYAL TSPQWLGPQIE+IRF+TKSIEREINSVNDNPLIDV+RNKA+ GGNFQGTPIGVSMDN RLA+A+IGKL+FAQF+EL ND YNNGLPSNLS GRNP+
Sbjct:  260 VGSGVASMVLFEANILALLAEVLSAVFAEVMQGKPEFTDHLIHKLKYHPGQIEAAAIMEHILDGSSYVKNAK-LQQPDPLQKPRKDRYALVTSPQWLGPQIEIIRFSTKSIEREINSVNDNPLIDVTRNKAVSGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELANDLYNNGLPSNLSVGRNPS 445          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 5.966e-85
Identity = 153/187 (81.82%), Postives = 171/187 (91.44%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPT 561
            VGS LA+ V+F+AN LA+LSE+LSA+F EVM GKPE+TDHLTHKLKHHPG IEAAAIMEHIL GSS+++ AKK++E+DPL KPKQDRYALRTSPQWLGPQIEVIR ATKSIERE+NSVNDNP+IDV R KALHGGNFQGTPIGVSMDN RLAIA IGKLMFAQFSELVN+FYNNGL SNL+G RNP+
Sbjct:  251 VGSALAATVMFDANILAVLSEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGSIEAAAIMEHILAGSSFMSHAKKVNEMDPLLKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREVNSVNDNPVIDVHRGKALHGGNFQGTPIGVSMDNARLAIANIGKLMFAQFSELVNEFYNNGLTSNLAGSRNPS 437          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 2.961e-84
Identity = 150/187 (80.21%), Postives = 171/187 (91.44%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPT 561
            VG+ LAS+V F+AN LALLSE++SA+F EVM GKPEFTD LTHKLKHHPGQ+EAAAIME++LDGSSY+  A KLHE++PLQKPKQDRY LRTSPQWLGPQ+E+IR AT  IEREINSVNDNP+IDV+R+KALHGGNFQGTPIGVSMDN RL+I+AIGKLMFAQFSELVND+YN GLPSNLSGG NP+
Sbjct:  267 VGAALASIVCFDANVLALLSEVISAMFCEVMNGKPEFTDPLTHKLKHHPGQMEAAAIMEYVLDGSSYMKHAAKLHEMNPLQKPKQDRYGLRTSPQWLGPQVEIIRSATHMIEREINSVNDNPVIDVARDKALHGGNFQGTPIGVSMDNLRLSISAIGKLMFAQFSELVNDYYNGGLPSNLSGGPNPS 453          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: PALY_VITVI (Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 4.141e-78
Identity = 142/150 (94.67%), Postives = 145/150 (96.67%), Query Frame = 1
Query:  112 TDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPT 561
            TDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  AKKLHE+DPLQKPKQDRYALRTSPQWLGP IEVIR +TKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSG RNP+
Sbjct:    1 TDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEAKKLHEMDPLQKPKQDRYALRTSPQWLGPHIEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGSRNPS 150          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: PALY_AMAMU (Phenylalanine ammonia-lyase OS=Amanita muscaria GN=PAL PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.009e-28
Identity = 73/185 (39.46%), Postives = 114/185 (61.62%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQG-KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEI---DPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSV--NDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            + +A++ L EA +L LL+++ +A+  E + G +      +    + HPGQ+E A  + ++LDGS    + +  HE+   D     +QDRY LRTSPQ+LGPQIE I  A +++ +E N +   DNPLID    ++ HGGNFQ   +  +M+ TRLA+  +GKL+F+Q +ELVN   N GLP +++
Sbjct:  291 ASVAALALNEAIHLVLLAQVCTAMGTEALIGTRASHAPFIHATARPHPGQVECAENIWNLLDGSKLAQLEE--HEVRLEDDKYTLRQDRYPLRTSPQFLGPQIEDIISAFQTVTQECNYLPATDNPLIDGETGESHHGGNFQAMAVTNAMEKTRLALHHVGKLLFSQSTELVNPAMNRGLPPSVA 473          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: PALY_USTMA (Phenylalanine ammonia-lyase OS=Ustilago maydis GN=PAL1 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 6.704e-28
Identity = 69/185 (37.30%), Postives = 110/185 (59.46%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGS---SYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDV--SRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            + +A +  +EA NLA L+++ +A+  E ++G         H++ + HPGQI++A  +  +L GS    ++   K +   +     +QDRY LRT+ QW+GP +E I  A +S++ EINS  DNP+ID      +  HGGNFQ   +  +++  RLA+ A+GK+ F Q +ELVN   N GLP+NL+
Sbjct:  271 ASVAGLATYEAENLASLTQLTTAMAVEALKGTDASFAPFIHEIARPHPGQIKSAKFIRALLSGSRLAEHLENEKHVLFSEDNGTLRQDRYTLRTASQWVGPGLEDIENAKRSVDIEINSTTDNPMIDPYDGDGRIHHGGNFQAMAMTNAVEKIRLALCAMGKMTFQQMTELVNPAMNRGLPANLA 455          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: PALY_RHOTO (Phenylalanine ammonia-lyase OS=Rhodosporidium toruloides GN=PAL PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 6.704e-28
Identity = 75/184 (40.76%), Postives = 107/184 (58.15%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKP-EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY-VNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN-SVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            V + +A++ L +A+ L+LLS+ L+A+  E M G    F   L    + HP QIE A  +  +L+GS + V+  +++   D     +QDRY LRTSPQWLGP +  +  A   +  E   S  DNPLIDV    + HGGNFQ   +  +M+ TRL +A IGKL F Q +E++N   N GLPS L+
Sbjct:  274 VSASMATLALHDAHMLSLLSQSLTAMTVEAMVGHAGSFHPFLHDVTRPHPTQIEVAGNIRKLLEGSRFAVHHEEEVKVKDDEGILRQDRYPLRTSPQWLGPLVSDLIHAHAVLTIEAGQSTTDNPLIDVENKTSHHGGNFQAAAVANTMEKTRLGLAQIGKLNFTQLTEMLNAGMNRGLPSCLA 457          
The following BLAST results are available for this feature:
BLAST of CF510256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
PAL1_IPOBA1.466e-9188.59Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=... [more]
PAL3_ARATH7.276e-9187.17Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PAL1_RUBID9.503e-9187.17Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]
PAL3_PHAVU9.204e-8683.96Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PAL1_ORYSJ5.966e-8581.82Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_PINTA2.961e-8480.21Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]
PALY_VITVI4.141e-7894.67Phenylalanine ammonia-lyase (Fragment) OS=Vitis vi... [more]
PALY_AMAMU3.009e-2839.46Phenylalanine ammonia-lyase OS=Amanita muscaria GN... [more]
PALY_USTMA6.704e-2837.30Phenylalanine ammonia-lyase OS=Ustilago maydis GN=... [more]
PALY_RHOTO6.704e-2840.76Phenylalanine ammonia-lyase OS=Rhodosporidium toru... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-749 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-76_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510256 ID=CF510256; Name=CF510256; organism=Citrus sinensis; type=EST; length=570bp
GTTGGTTCTGGCCTGGCTTCTATGGTTCTGTTTGAGGCTAACAACCTTGC
TCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTGAAGTCATGCAAGGCA
AACCTGAGTTCACCGATCACTTGACACACAAATTGAAGCACCATCCTGGC
CAAATTGAGGCTGCTGCTATAATGGAACATATCCTCGATGGCAGCTCTTA
TGTTAACGTGGCTAAGAAGTTGCATGAGATTGATCCTCTGCAGAAGCCGA
AACAGGATCGTTATGCCCTGAGAACTTCACCACAATGGCTCGGCCCTCAG
ATCGAAGTGATTCGGTTTGCAACCAAGTCTATTGAACGGGAGATCAACTC
GGTGAATGACAATCCCCTGATCGACGTTTCAAGGAACAAGGCCTTACATG
GTGGCAATTTTCAGGGGACCCCAATTGGTGTCTCAATGGACAATACCCGT
TTGGCTATTGCGGCAATAGGGAAGCTCATGTTTGCCCAATTTTCTGAACT
TGTCAACGATTTTTACAACAATGGATTGCCGTCAAATCTGTCTGGTGGCA
GGAATCCTACCTGGATTATG
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