CF510256

Overview
NameCF510256
Unique NameCF510256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:570..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_PSEAE (Histidine ammonia-lyase OS=Pseudomonas aeruginosa GN=hutH PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 63/187 (33.69%), Postives = 94/187 (50.27%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            V +  A   LFEA +L   + +   +  E M G     D   H  +   GQI+ AA    +L  SS   VA+   + D +Q P    Y+LR  PQ +G  +  +R A + +E E N+V+DNPL+  +    + GGNF   P+ ++ DN  LA+A IG L   + S L+ D + + LP  L  +GG N
Sbjct:  199 VSTAYALRGLFEAEDLFAAATVCGGLSVEAMLGSRAPFDARIHAARGQRGQIDVAAAYRDLLTASS--EVARSHEKCDKVQDP----YSLRCQPQVMGACLTQMRQAAEVLEIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNLALALAEIGSLSERRIS-LMMDMHMSQLPPFLVANGGVN 378          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_PSEAB (Histidine ammonia-lyase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hutH PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 63/187 (33.69%), Postives = 94/187 (50.27%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            V +  A   LFEA +L   + +   +  E M G     D   H  +   GQI+ AA    +L  SS   VA+   + D +Q P    Y+LR  PQ +G  +  +R A + +E E N+V+DNPL+  +    + GGNF   P+ ++ DN  LA+A IG L   + S L+ D + + LP  L  +GG N
Sbjct:  199 VSTAYALRGLFEAEDLFAAATVCGGLSVEAMLGSRAPFDARIHAARGQRGQIDVAAAYRDLLTASS--EVARSHEKCDKVQDP----YSLRCQPQVMGACLTQMRQAAEVLEIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNLALALAEIGSLSERRIS-LMMDMHMSQLPPFLVANGGVN 378          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_PSEA8 (Histidine ammonia-lyase OS=Pseudomonas aeruginosa (strain LESB58) GN=hutH PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 63/187 (33.69%), Postives = 94/187 (50.27%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            V +  A   LFEA +L   + +   +  E M G     D   H  +   GQI+ AA    +L  SS   VA+   + D +Q P    Y+LR  PQ +G  +  +R A + +E E N+V+DNPL+  +    + GGNF   P+ ++ DN  LA+A IG L   + S L+ D + + LP  L  +GG N
Sbjct:  199 VSTAYALRGLFEAEDLFAAATVCGGLSVEAMLGSRAPFDARIHAARGQRGQIDVAAAYRDLLTASS--EVARSHEKCDKVQDP----YSLRCQPQVMGACLTQMRQAAEVLEIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNLALALAEIGSLSERRIS-LMMDMHMSQLPPFLVANGGVN 378          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH2_FUSNN (Histidine ammonia-lyase 2 OS=Fusobacterium nucleatum subsp. nucleatum GN=hutH2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 58/185 (31.35%), Postives = 96/185 (51.89%), Query Frame = 1
Query:   10 GLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKA-LHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            G A + +++A  L   ++I++++  + + G  +  D   H ++ H GQI +A  +  +L GS               +K  QD Y+LR +PQ  G       +  +++E EINSV DNPLI    N A + GGNF G PI ++MD   + ++ I  +   +  +LVN   ++GLP+ L  +GG N
Sbjct:  204 GNAVLAVYDAEKLLKQADIVASLSIDALGGIIDAFDERIHLIRPHKGQIYSAENLRKLLKGSKRTTRQG--------EKRMQDAYSLRCTPQVHGASRLAFDYVKQTVETEINSVTDNPLIFPGENGACISGGNFHGQPIAIAMDTLGILMSEIANISERRIEKLVNPALSHGLPAFLVKNGGIN 380          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_GLOVI (Histidine ammonia-lyase OS=Gloeobacter violaceus GN=hutH PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.214e-18
Identity = 57/180 (31.67%), Postives = 92/180 (51.11%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQG-KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            S L ++ +  A  LA L+++  A+  E   G +  F  H  H+L+ HPGQ  +A  +  + + S+ +        +       QD Y+LR +PQ  G  ++ I +A   I  EINSV DNPLI     + + GG+F G P+ ++ D   +A+A +  +   +   LVN  Y+NGLP  L+
Sbjct:  206 SALGALTVHRAQRLAKLADLACAMTLEATLGSRSAFLPHF-HRLRPHPGQQSSARNLLVLTEDSALIASHAGCDRV-------QDAYSLRCAPQVHGASLDAISYAAGVIAIEINSVTDNPLIFADTGQVVTGGHFHGQPVAMASDVLAIALAELADISERRTERLVNADYSNGLPMFLT 377          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_CAUCR (Histidine ammonia-lyase OS=Caulobacter crescentus GN=hutH PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.073e-17
Identity = 59/172 (34.30%), Postives = 88/172 (51.16%), Query Frame = 1
Query:   28 LFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            LFEA  L   + +  A+  E  +G     D   H L+ H GQIE AA +  ++  S     A  L E + +Q P    Y LR  PQ +G  ++++R A  ++  E N V+DNPLI    ++AL GGNF   P+  + D   LA+  IG +   + + LV D   +GLP+ L+
Sbjct:  208 LFEAERLFQSALVTGALSTEAAKGSDTPFDPRIHTLRRHVGQIETAAALRALMSASEIR--ASHLKEDERVQDP----YCLRCQPQVMGAALDILRQAATTLATEANCVSDNPLIFPEADEALSGGNFHAEPVAFAADMIALAVCEIGSIAERRIAMLV-DPALSGLPAFLT 372          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_CAUCN (Histidine ammonia-lyase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=hutH PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.073e-17
Identity = 59/172 (34.30%), Postives = 88/172 (51.16%), Query Frame = 1
Query:   28 LFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            LFEA  L   + +  A+  E  +G     D   H L+ H GQIE AA +  ++  S     A  L E + +Q P    Y LR  PQ +G  ++++R A  ++  E N V+DNPLI    ++AL GGNF   P+  + D   LA+  IG +   + + LV D   +GLP+ L+
Sbjct:  212 LFEAERLFQSALVTGALSTEAAKGSDTPFDPRIHTLRRHVGQIETAAALRALMSASEIR--ASHLKEDERVQDP----YCLRCQPQVMGAALDILRQAATTLATEANCVSDNPLIFPEADEALSGGNFHAEPVAFAADMIALAVCEIGSIAERRIAMLV-DPALSGLPAFLT 376          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_SHEPA (Histidine ammonia-lyase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=hutH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 54/168 (32.14%), Postives = 84/168 (50.00%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPK-QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVN 507
            + LA   LF A +L   S ++ A+  E   G     D   H  +   GQI++AA+  H+L G S ++       +D +   K QD Y+LR  PQ LG  +  IR A + +  E N V DNPL+       + GGNF   P+ ++ DN  +AIA +G +   + + L++
Sbjct:  202 TALALEGLFNAEDLFAASSVIGAMSVEAAMGSRSPFDPRIHAARGQKGQIDSAAVFRHLLGGESEIS-------LDHVNCEKVQDPYSLRCQPQVLGACLTQIRHAAEVLGTEANGVTDNPLVFQDTGDIISGGNFHAEPVAMAADNLAIAIAELGSIAERRIALLID 362          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_BURPS (Histidine ammonia-lyase OS=Burkholderia pseudomallei GN=hutH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 65/185 (35.14%), Postives = 97/185 (52.43%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            + LA   LF   +L   + +  A+  +   G  +  D   H+L+ H GQI+AAA    +LDGS+ +NV+ +  + D +Q P    Y+LR  PQ +G  ++ IR A   +  E N+V+DNPLI     + L GGNF   P+  + DN  +A A IG L   + + L+ D   +GLP  L   GG N
Sbjct:  200 TALALDNLFAIEDLYRTALVSGALSVDAAAGSVKPFDARIHELRGHRGQIDAAAAYRSLLDGSA-INVSHR--DCDKVQDP----YSLRCQPQVMGACLDQIRHAAGVLLIEANAVSDNPLIFPDTGEVLSGGNFHAEPVAFAADNLAIAAAEIGALAERRIALLI-DATLSGLPPFLVKDGGVN 376          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_BURP6 (Histidine ammonia-lyase OS=Burkholderia pseudomallei (strain 668) GN=hutH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 65/185 (35.14%), Postives = 97/185 (52.43%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            + LA   LF   +L   + +  A+  +   G  +  D   H+L+ H GQI+AAA    +LDGS+ +NV+ +  + D +Q P    Y+LR  PQ +G  ++ IR A   +  E N+V+DNPLI     + L GGNF   P+  + DN  +A A IG L   + + L+ D   +GLP  L   GG N
Sbjct:  200 TALALDNLFAIEDLYRTALVSGALSVDAAAGSVKPFDARIHELRGHRGQIDAAAAYRSLLDGSA-INVSHR--DCDKVQDP----YSLRCQPQVMGACLDQIRHAAGVLLIEANAVSDNPLIFPDTGEVLSGGNFHAEPVAFAADNLAIAAAEIGALAERRIALLI-DATLSGLPPFLVKDGGVN 376          
The following BLAST results are available for this feature:
BLAST of CF510256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
HUTH_PSEAE4.816e-1833.69Histidine ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
HUTH_PSEAB4.816e-1833.69Histidine ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
HUTH_PSEA84.816e-1833.69Histidine ammonia-lyase OS=Pseudomonas aeruginosa ... [more]
HUTH2_FUSNN4.816e-1831.35Histidine ammonia-lyase 2 OS=Fusobacterium nucleat... [more]
HUTH_GLOVI8.214e-1831.67Histidine ammonia-lyase OS=Gloeobacter violaceus G... [more]
HUTH_CAUCR1.073e-1734.30Histidine ammonia-lyase OS=Caulobacter crescentus ... [more]
HUTH_CAUCN1.073e-1734.30Histidine ammonia-lyase OS=Caulobacter crescentus ... [more]
HUTH_SHEPA1.401e-1732.14Histidine ammonia-lyase OS=Shewanella pealeana (st... [more]
HUTH_BURPS1.401e-1735.14Histidine ammonia-lyase OS=Burkholderia pseudomall... [more]
HUTH_BURP61.401e-1735.14Histidine ammonia-lyase OS=Burkholderia pseudomall... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-749 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-76_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510256 ID=CF510256; Name=CF510256; organism=Citrus sinensis; type=EST; length=570bp
GTTGGTTCTGGCCTGGCTTCTATGGTTCTGTTTGAGGCTAACAACCTTGC
TCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTGAAGTCATGCAAGGCA
AACCTGAGTTCACCGATCACTTGACACACAAATTGAAGCACCATCCTGGC
CAAATTGAGGCTGCTGCTATAATGGAACATATCCTCGATGGCAGCTCTTA
TGTTAACGTGGCTAAGAAGTTGCATGAGATTGATCCTCTGCAGAAGCCGA
AACAGGATCGTTATGCCCTGAGAACTTCACCACAATGGCTCGGCCCTCAG
ATCGAAGTGATTCGGTTTGCAACCAAGTCTATTGAACGGGAGATCAACTC
GGTGAATGACAATCCCCTGATCGACGTTTCAAGGAACAAGGCCTTACATG
GTGGCAATTTTCAGGGGACCCCAATTGGTGTCTCAATGGACAATACCCGT
TTGGCTATTGCGGCAATAGGGAAGCTCATGTTTGCCCAATTTTCTGAACT
TGTCAACGATTTTTACAACAATGGATTGCCGTCAAATCTGTCTGGTGGCA
GGAATCCTACCTGGATTATG
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