CF510256

Overview
NameCF510256
Unique NameCF510256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:570..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_BURP0 (Histidine ammonia-lyase OS=Burkholderia pseudomallei (strain 1106a) GN=hutH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 65/185 (35.14%), Postives = 97/185 (52.43%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            + LA   LF   +L   + +  A+  +   G  +  D   H+L+ H GQI+AAA    +LDGS+ +NV+ +  + D +Q P    Y+LR  PQ +G  ++ IR A   +  E N+V+DNPLI     + L GGNF   P+  + DN  +A A IG L   + + L+ D   +GLP  L   GG N
Sbjct:  200 TALALDNLFAIEDLYRTALVSGALSVDAAAGSVKPFDARIHELRGHRGQIDAAAAYRSLLDGSA-INVSHR--DCDKVQDP----YSLRCQPQVMGACLDQIRHAAGVLLIEANAVSDNPLIFPDTGEVLSGGNFHAEPVAFAADNLAIAAAEIGALAERRIALLI-DATLSGLPPFLVKDGGVN 376          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_BURMA (Histidine ammonia-lyase OS=Burkholderia mallei GN=hutH PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 65/185 (35.14%), Postives = 97/185 (52.43%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            + LA   LF   +L   + +  A+  +   G  +  D   H+L+ H GQI+AAA    +LDGS+ +NV+ +  + D +Q P    Y+LR  PQ +G  ++ IR A   +  E N+V+DNPLI     + L GGNF   P+  + DN  +A A IG L   + + L+ D   +GLP  L   GG N
Sbjct:  200 TALALDNLFAIEDLYRTALVSGALSVDAAAGSVKPFDARIHELRGHRGQIDAAAAYRSLLDGSA-INVSHR--DCDKVQDP----YSLRCQPQVMGACLDQIRHAAGVLLIEANAVSDNPLIFPDTGEVLSGGNFHAEPVAFAADNLAIAAAEIGALAERRIALLI-DATLSGLPPFLVKDGGVN 376          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_BURM9 (Histidine ammonia-lyase OS=Burkholderia mallei (strain NCTC 10229) GN=hutH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 65/185 (35.14%), Postives = 97/185 (52.43%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            + LA   LF   +L   + +  A+  +   G  +  D   H+L+ H GQI+AAA    +LDGS+ +NV+ +  + D +Q P    Y+LR  PQ +G  ++ IR A   +  E N+V+DNPLI     + L GGNF   P+  + DN  +A A IG L   + + L+ D   +GLP  L   GG N
Sbjct:  200 TALALDNLFAIEDLYRTALVSGALSVDAAAGSVKPFDARIHELRGHRGQIDAAAAYRSLLDGSA-INVSHR--DCDKVQDP----YSLRCQPQVMGACLDQIRHAAGVLLIEANAVSDNPLIFPDTGEVLSGGNFHAEPVAFAADNLAIAAAEIGALAERRIALLI-DATLSGLPPFLVKDGGVN 376          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_BURM7 (Histidine ammonia-lyase OS=Burkholderia mallei (strain NCTC 10247) GN=hutH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 65/185 (35.14%), Postives = 97/185 (52.43%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            + LA   LF   +L   + +  A+  +   G  +  D   H+L+ H GQI+AAA    +LDGS+ +NV+ +  + D +Q P    Y+LR  PQ +G  ++ IR A   +  E N+V+DNPLI     + L GGNF   P+  + DN  +A A IG L   + + L+ D   +GLP  L   GG N
Sbjct:  200 TALALDNLFAIEDLYRTALVSGALSVDAAAGSVKPFDARIHELRGHRGQIDAAAAYRSLLDGSA-INVSHR--DCDKVQDP----YSLRCQPQVMGACLDQIRHAAGVLLIEANAVSDNPLIFPDTGEVLSGGNFHAEPVAFAADNLAIAAAEIGALAERRIALLI-DATLSGLPPFLVKDGGVN 376          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_AGRT5 (Histidine ammonia-lyase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=hutH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 58/179 (32.40%), Postives = 94/179 (52.51%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            + LA   LF A+  A  + I  A+  +   G         H L+ H GQI+A A + ++L+GS       ++  I+  ++  QD Y +R  PQ  G  ++++R   +++E E N+V DNPL+ +S N  + GGNF   P+  + D T LAI  IG +   + + LV+   + GLP+ LS
Sbjct:  204 TALALAGLFRAHRAAQAALITGALSTDAAMGSSAPFHPDIHSLRGHKGQIDAGAALRNLLEGSEI-----RVSHIEGDERV-QDPYCIRCQPQVDGACLDLLRQVARTLEIEANAVTDNPLV-LSDNSVVSGGNFHAEPVAFAADQTALAICEIGAIAQRRVALLVDPALSYGLPAFLS 375          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_VIBCH (Histidine ammonia-lyase OS=Vibrio cholerae GN=hutH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.390e-17
Identity = 54/160 (33.75%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   28 LFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVN 507
            LF A +L   + +  A+  E   G     D   H+++ H  Q++AA    H+LD SS +  +    E        QD Y+LR  PQ +G  ++ IR A + +E E NSV+DNPL+       + GGNF   P+ ++ DN  LAIA IG L   + + L++
Sbjct:  209 LFVAEDLFASATVCGAMSVEAALGSRRPFDPRIHRVRGHRTQMDAATAYRHLLDVSSEIGQSHSNCE------KVQDPYSLRCQPQVMGACLQQIRSAAEVLEVEANSVSDNPLVFAEDGDIISGGNFHAEPVAMAADNLALAIAEIGSLSERRMALLID 362          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_PHOLL (Histidine ammonia-lyase OS=Photorhabdus luminescens subsp. laumondii GN=hutH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.390e-17
Identity = 60/188 (31.91%), Postives = 97/188 (51.60%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPK-QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            V +  A   LFEA +L   + +  ++  E   G  +  D   H ++   GQI+ AA+  H+L+ SS ++ +        +  PK QD Y+LR  PQ +G  +  +R A   I  E N+V+DNPL+   + + + GGNF   P+ ++ DN  L +A IG L   + + L+ D + + LP  L  +GG N
Sbjct:  200 VSTAFALRGLFEAEDLLAAAIVCGSLSVEAALGSRKPFDARVHVVRGQQGQIDVAALYRHVLEESSELSDSH-------INCPKVQDPYSLRCQPQVMGACLTQLRHAADVILTEANAVSDNPLVFAEQGEVISGGNFHAEPVAMASDNLALVLAEIGALSERRIA-LLMDSHMSQLPPFLVENGGVN 379          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_CAUSK (Histidine ammonia-lyase OS=Caulobacter sp. (strain K31) GN=hutH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.390e-17
Identity = 59/176 (33.52%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   16 ASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            A   LF+A  L   + +  A+  E  +G     D   H L+  PGQIE AA +  ++ GS+   +     E D      QD Y LR  PQ +G  ++++R A  ++  E N V+DNPLI    ++AL GGNF   P+  + D   LA+  IG +   + + LV D   +GLP+ L+
Sbjct:  204 ALAALFDAERLFQSALVTGALATEAAKGSDTPFDPRIHTLRRQPGQIETAAALRALMAGSA---IRDSHREGDTRV---QDPYCLRCQPQVMGAALDILRQAAVTLSTEANGVSDNPLIFPDTDEALSGGNFHAEPVAFAADIIALAVCEIGSIAERRIAMLV-DPACSGLPAFLT 372          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_RHOCS (Histidine ammonia-lyase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=hutH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.077e-17
Identity = 58/170 (34.12%), Postives = 85/170 (50.00%), Query Frame = 1
Query:   64 ILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGS----SYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            +  A+  +  QG     D   H L+   GQI+AAA    +L GS    S+++ A+            QD Y LR  PQ +G  ++ +RFA  ++  E N+V DNPL+       L GGNF   P+ ++ D   LA+A IG L   + + LV+  +N GLP+ L   GG N
Sbjct:  222 VAGALSIDAAQGSDTPFDARIHALRGQRGQIDAAAGYRRLLAGSPIRASHLSCARV-----------QDPYCLRCQPQVMGACLDQLRFAAGTLATEANAVTDNPLVFPDDGDILSGGNFHAEPVAMAADQIALALAEIGSLSERRTAMLVDPHHNGGLPAFLVTDGGLN 380          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_RHILO (Histidine ammonia-lyase OS=Rhizobium loti GN=hutH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.077e-17
Identity = 58/176 (32.95%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   16 ASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            A   LFEA  L   + +  A+  +  +G     D   H L+ H GQIE A  + +++ GS+     ++ H +    +  QD Y LR  PQ +G  ++V+R A  ++  E N V DNPLI    + AL GGNF   P+  + D   LA+  IG L   + + LV D   +G+P+ L+
Sbjct:  204 ALAALFEAEVLYQSALVAGALSTDAAKGSDAPFDPRIHLLRKHRGQIETAEALRNLMAGSAI----RESHRVG--DERVQDPYCLRCQPQVMGAALDVLRKAADTLGTEANGVTDNPLIFAEDDTALSGGNFHAEPVAFAADMIALAVCEIGSLSERRIAMLV-DPALSGMPAFLT 372          
The following BLAST results are available for this feature:
BLAST of CF510256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
HUTH_BURP01.401e-1735.14Histidine ammonia-lyase OS=Burkholderia pseudomall... [more]
HUTH_BURMA1.401e-1735.14Histidine ammonia-lyase OS=Burkholderia mallei GN=... [more]
HUTH_BURM91.401e-1735.14Histidine ammonia-lyase OS=Burkholderia mallei (st... [more]
HUTH_BURM71.401e-1735.14Histidine ammonia-lyase OS=Burkholderia mallei (st... [more]
HUTH_AGRT51.401e-1732.40Histidine ammonia-lyase OS=Agrobacterium tumefacie... [more]
HUTH_VIBCH2.390e-1733.75Histidine ammonia-lyase OS=Vibrio cholerae GN=hutH... [more]
HUTH_PHOLL2.390e-1731.91Histidine ammonia-lyase OS=Photorhabdus luminescen... [more]
HUTH_CAUSK2.390e-1733.52Histidine ammonia-lyase OS=Caulobacter sp. (strain... [more]
HUTH_RHOCS4.077e-1734.12Histidine ammonia-lyase OS=Rhodospirillum centenum... [more]
HUTH_RHILO4.077e-1732.95Histidine ammonia-lyase OS=Rhizobium loti GN=hutH ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-749 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-76_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510256 ID=CF510256; Name=CF510256; organism=Citrus sinensis; type=EST; length=570bp
GTTGGTTCTGGCCTGGCTTCTATGGTTCTGTTTGAGGCTAACAACCTTGC
TCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTGAAGTCATGCAAGGCA
AACCTGAGTTCACCGATCACTTGACACACAAATTGAAGCACCATCCTGGC
CAAATTGAGGCTGCTGCTATAATGGAACATATCCTCGATGGCAGCTCTTA
TGTTAACGTGGCTAAGAAGTTGCATGAGATTGATCCTCTGCAGAAGCCGA
AACAGGATCGTTATGCCCTGAGAACTTCACCACAATGGCTCGGCCCTCAG
ATCGAAGTGATTCGGTTTGCAACCAAGTCTATTGAACGGGAGATCAACTC
GGTGAATGACAATCCCCTGATCGACGTTTCAAGGAACAAGGCCTTACATG
GTGGCAATTTTCAGGGGACCCCAATTGGTGTCTCAATGGACAATACCCGT
TTGGCTATTGCGGCAATAGGGAAGCTCATGTTTGCCCAATTTTCTGAACT
TGTCAACGATTTTTACAACAATGGATTGCCGTCAAATCTGTCTGGTGGCA
GGAATCCTACCTGGATTATG
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