CF510256

Overview
NameCF510256
Unique NameCF510256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:570..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_BURA4 (Histidine ammonia-lyase OS=Burkholderia ambifaria (strain MC40-6) GN=hutH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.077e-17
Identity = 63/185 (34.05%), Postives = 93/185 (50.27%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            + LA   +F   +L   + +  A+  +   G  +  D   H+L+ H GQIEAAA    +LDGS    + +   + D +Q P    Y+LR  PQ +G  ++ +R A   +  E N+V+DNPLI     + L GGNF   P+  + DN  LA A IG L   + + L+ D   +GLP  L   GG N
Sbjct:  200 TALALDNMFSIEDLYRTALVAGALSVDAAAGSVKPFDARIHELRGHRGQIEAAAAYRDLLDGSP---INQSHRDCDKVQDP----YSLRCQPQVMGACLDQMRHAADVLLIEANAVSDNPLIFPDTGEVLSGGNFHAEPVAFAADNLALAAAEIGALAERRIALLI-DATLSGLPPFLVKDGGVN 376          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_ALKMQ (Histidine ammonia-lyase OS=Alkaliphilus metalliredigens (strain QYMF) GN=hutH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.077e-17
Identity = 54/187 (28.88%), Postives = 95/187 (50.80%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS--GGRN 555
            V + + ++++++   L  L++I  A+  E  +G  +  DH  H+++ H GQ + A  + +++ GS+ +    ++          QD Y LR  PQ  G   + I +A   +  EIN   DNPLI    ++ + GGNF G P+ ++ D   +AIA +  +   +   LVN    +GLP+ L+  GG N
Sbjct:  200 VMTAIGALLIYDCQKLIKLADIAGALTLEAQRGIIDAFDHKVHRVRPHQGQQQTAQNIVNLVAGSTLITRQGEVRV--------QDAYTLRCIPQIHGASRDAIMYAVDKVNIEINGATDNPLIFPEEDEVISGGNFHGQPMALTFDFLGIAIAELANVSERRIERLVNP-QLSGLPAFLTAKGGLN 377          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_YERPS (Histidine ammonia-lyase OS=Yersinia pseudotuberculosis GN=hutH PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.324e-17
Identity = 61/187 (32.62%), Postives = 94/187 (50.27%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            V +  A   LFEA +L   + +   +  +   G     D   H ++   GQI+AA+   H+L   S ++ + K    D +Q P    Y+LR  PQ +G  +  IR A + +  E N+V+DNPL+   +   L GGNF   P+ ++ DN  LA+A IG L   + S L+ D + + LP  L  +GG N
Sbjct:  200 VSAAYALRGLFEAEDLYAAASVFGCLTVDAALGSRSPFDARIHAVRGQRGQIDAASTYRHLLGERSEISESHK--NCDKVQDP----YSLRCQPQVMGACLGQIRQAAEVLAIESNAVSDNPLVFAEQGDVLSGGNFHAEPVAMAADNLALALAEIGSLSECRIS-LMMDKHMSQLPPFLVENGGVN 379          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_PSESM (Histidine ammonia-lyase OS=Pseudomonas syringae pv. tomato GN=hutH PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.324e-17
Identity = 63/187 (33.69%), Postives = 94/187 (50.27%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            V +  A   LFE  +L   +    ++  E + G     D   H  +   GQI+AAA    +L  SS   V++     D +Q P    Y+LR  PQ +G  +  +R A + +E E N+V+DNPL+  + N  + GGNF   P+ ++ DN  LAIA IG L   + S L+ D + + LP  L  +GG N
Sbjct:  205 VSTAYALRGLFEGEDLFAAALTCGSLTVEAVLGSRSPFDARIHAARGQRGQIDAAACYRELLGESS--GVSESHRNCDKVQDP----YSLRCQPQVMGACLTQLRQAAEVLEVESNAVSDNPLVFAAENDVISGGNFHAEPVAMAADNLALAIAEIGSLSERRIS-LMMDKHMSQLPPFLVANGGVN 384          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_YERPE (Histidine ammonia-lyase OS=Yersinia pestis GN=hutH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 60/187 (32.09%), Postives = 94/187 (50.27%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            V +  A   LFEA +L   + +   +  +   G     D   H ++   GQI+AA+   H+L   S ++ + K    D +Q P    Y+LR  PQ +G  +  IR A + +  E N+V+DNPL+   +   L GGNF   P+ ++ DN  LA+A +G L   + S L+ D + + LP  L  +GG N
Sbjct:  200 VSAAYALRGLFEAEDLYAAASVFGCLTVDAALGSRSPFDARIHAVRGQRGQIDAASTYRHLLGERSEISESHK--NCDKVQDP----YSLRCQPQVMGACLGQIRQAAEVLAIESNAVSDNPLVFAEQGDVLSGGNFHAEPVAMAADNLALALAEVGSLSECRIS-LMMDKHMSQLPPFLVENGGVN 379          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_STAS1 (Histidine ammonia-lyase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=hutH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 54/172 (31.40%), Postives = 83/172 (48.26%), Query Frame = 1
Query:   34 EANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLI--DVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            EA  L   +E ++A+  + + G  +  +   HK ++   QI+ AA M   LDGS        +          QD Y LR  PQ  G   +V  +  + +E E+N+ NDNPLI  +      + GGNF G PI  ++D  +L ++ +  +   +   LVN   NNGLP+ LS
Sbjct:  210 EAEALGYQAEWIAALTHQALNGITDAYNEKVHKARNFQEQIDVAARMLDWLDGSELTTTQGDIRV--------QDAYTLRCIPQIHGASFQVFNYVKEKLEFEMNAANDNPLIFDEGDETLVISGGNFHGQPIAFALDFLKLGVSELANVSERRLERLVNPQLNNGLPAFLS 373          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_SHEPW (Histidine ammonia-lyase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=hutH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 53/168 (31.55%), Postives = 83/168 (49.40%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPK-QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVN 507
            + LA   LF A +L   S ++ A+  E   G     D   H  +   GQI++AA+  H+L   S ++       +D +   K QD Y+LR  PQ LG  +  IR A + +  E N V DNPL+       + GGNF   P+ ++ DN  +AIA +G +   + + L++
Sbjct:  202 TALALEGLFNAEDLFAASSVIGAMSVEAAMGSRSPFDSRIHAARGQKGQIDSAAVFRHLLGDESEIS-------LDHVNCEKVQDPYSLRCQPQVLGACLTQIRHAAEVLGTEANGVTDNPLVFQDTGDIISGGNFHAEPVAMAADNLAIAIAELGSIAERRIALLID 362          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_GEOSW (Histidine ammonia-lyase OS=Geobacillus sp. (strain WCH70) GN=hutH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 59/179 (32.96%), Postives = 89/179 (49.72%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            + +  +V  EA  LA  SE ++A+  E ++G  +  D   H ++ +  Q+E AA +   L GS       +L          QD Y+LR  PQ  G   +V+ +  + +E EIN+  DNPLI     K + GGNF G PI  +MD  ++AIA +  +   +   LVN   N+ LP  LS
Sbjct:  200 TAMGVVVYLEAEQLAYESEAIAAMTIEGLRGIIDAFDEHVHLVRGYRQQVEVAARIRDYLAGSKLTTRQGELRV--------QDAYSLRCIPQVHGASWQVLDYVKEKLEIEINAATDNPLIFEGGAKVISGGNFHGQPIAFAMDFMKIAIAELANISERRIERLVNPQLND-LPPFLS 369          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_GEOKA (Histidine ammonia-lyase OS=Geobacillus kaustophilus GN=hutH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 54/181 (29.83%), Postives = 89/181 (49.17%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            V + + ++   EA  LA  SE ++A+  E + G  +  D   H  +    Q+E A  +   L GS               ++  QD Y++R  PQ  G  +  +R+  +++E E+N+  DNPLI  +   AL GGNF G P+ ++MD  ++A+A +  +   +   LVN   + GLP  LS
Sbjct:  198 VMTAVGALAYLEAEQLAYDSEWIAALTIEALYGIVDAFDARIHAARGFQEQVEVAERLRRYLAGSQLTTRQG--------ERRVQDAYSIRCLPQVHGASLRALRYVKETLEIEMNAATDNPLI-FADGTALSGGNFHGQPVAIAMDLLKIAVAELANISERRIERLVNPQLSEGLPPFLS 369          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_RHORT (Histidine ammonia-lyase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=hutH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.082e-17
Identity = 58/177 (32.77%), Postives = 89/177 (50.28%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLP 531
            V + LA   LFE       + +  A+  E + G     D     L+   GQI+ AA+   +LDGS  +N A +     P  +  QD Y+LR  PQ +G  ++ +RFA +++  E N V DNPL+ V   + L GGNF   P+ ++ D   +A + IG L   + + L+ D   +GLP
Sbjct:  201 VSTALALAGLFEIERAFAAAILAGALSVEAVMGSHRPFDPRISALRGQFGQIDVAALFRLLLDGSP-LNAAHQ----GPSCERVQDPYSLRCQPQVMGAVLDQMRFAARTLTIEANGVTDNPLVLVDTGEVLSGGNFHAEPVAMAADQLAIAASEIGALSERRIAMLI-DSTISGLP 371          
The following BLAST results are available for this feature:
BLAST of CF510256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
HUTH_BURA44.077e-1734.05Histidine ammonia-lyase OS=Burkholderia ambifaria ... [more]
HUTH_ALKMQ4.077e-1728.88Histidine ammonia-lyase OS=Alkaliphilus metallired... [more]
HUTH_YERPS5.324e-1732.62Histidine ammonia-lyase OS=Yersinia pseudotubercul... [more]
HUTH_PSESM5.324e-1733.69Histidine ammonia-lyase OS=Pseudomonas syringae pv... [more]
HUTH_YERPE6.954e-1732.09Histidine ammonia-lyase OS=Yersinia pestis GN=hutH... [more]
HUTH_STAS16.954e-1731.40Histidine ammonia-lyase OS=Staphylococcus saprophy... [more]
HUTH_SHEPW6.954e-1731.55Histidine ammonia-lyase OS=Shewanella piezotoleran... [more]
HUTH_GEOSW6.954e-1732.96Histidine ammonia-lyase OS=Geobacillus sp. (strain... [more]
HUTH_GEOKA6.954e-1729.83Histidine ammonia-lyase OS=Geobacillus kaustophilu... [more]
HUTH_RHORT9.082e-1732.77Histidine ammonia-lyase OS=Rhodospirillum rubrum (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-749 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-76_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510256 ID=CF510256; Name=CF510256; organism=Citrus sinensis; type=EST; length=570bp
GTTGGTTCTGGCCTGGCTTCTATGGTTCTGTTTGAGGCTAACAACCTTGC
TCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTGAAGTCATGCAAGGCA
AACCTGAGTTCACCGATCACTTGACACACAAATTGAAGCACCATCCTGGC
CAAATTGAGGCTGCTGCTATAATGGAACATATCCTCGATGGCAGCTCTTA
TGTTAACGTGGCTAAGAAGTTGCATGAGATTGATCCTCTGCAGAAGCCGA
AACAGGATCGTTATGCCCTGAGAACTTCACCACAATGGCTCGGCCCTCAG
ATCGAAGTGATTCGGTTTGCAACCAAGTCTATTGAACGGGAGATCAACTC
GGTGAATGACAATCCCCTGATCGACGTTTCAAGGAACAAGGCCTTACATG
GTGGCAATTTTCAGGGGACCCCAATTGGTGTCTCAATGGACAATACCCGT
TTGGCTATTGCGGCAATAGGGAAGCTCATGTTTGCCCAATTTTCTGAACT
TGTCAACGATTTTTACAACAATGGATTGCCGTCAAATCTGTCTGGTGGCA
GGAATCCTACCTGGATTATG
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