CF510256

Overview
NameCF510256
Unique NameCF510256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:570..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_PSYIN (Histidine ammonia-lyase OS=Psychromonas ingrahamii (strain 37) GN=hutH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.082e-17
Identity = 57/174 (32.76%), Postives = 87/174 (50.00%), Query Frame = 1
Query:   28 LFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGG 549
            LF A +L   + +  A+  +   G     D   H+++ H  QI++A I  HILD  S V+     H     +K  QD Y+LR  PQ +G  ++ IR +    E E NSV+DNPL+       +  GNF   PI ++ DN  LAIA IG L   + + L+++  +   P  ++ G
Sbjct:  209 LFAAEDLFASATLCGAMTVDAALGSRRPFDDRVHQVRGHQSQIDSALIYRHILDTHSEVS-----HSHTACEKV-QDPYSLRCQPQVMGACLQQIRNSAAIYEIEANSVSDNPLVFAEDGDIISAGNFHAEPIAMASDNLALAIAEIGSLSERRMALLIDNSLSKLPPFLVNNG 376          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_GEOTN (Histidine ammonia-lyase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=hutH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.082e-17
Identity = 53/179 (29.61%), Postives = 88/179 (49.16%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            + +  +   EA  LA  SE ++A+  E + G  +  D   H+ +    Q E A  +   LDGS  +            ++  QD Y++R  PQ  G  +  +R+  +++E E+N+  DNPLI  +    L GGNF G P+ ++MD  ++A+A +  +   +   LVN   + GLP  LS
Sbjct:  200 TAMGVIAYLEAEQLAYDSEWIAALTIEALYGVIDAFDARIHEARGFLEQAEVAERLRRYLDGSQLITRQG--------ERRVQDAYSIRCIPQVHGASLRALRYVKETLEIEMNAATDNPLI-FADGAVLSGGNFHGQPVAIAMDLLKIAVAELANMSERRIERLVNPQLSEGLPPFLS 369          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_BURCM (Histidine ammonia-lyase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=hutH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.082e-17
Identity = 62/185 (33.51%), Postives = 93/185 (50.27%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            + LA   +F   +L   + +  A+  +   G  +  D   H+L+ H GQI+AAA    +LDGS    + +   + D +Q P    Y+LR  PQ +G  ++ +R A   +  E N+V+DNPLI     + L GGNF   P+  + DN  LA A IG L   + + L+ D   +GLP  L   GG N
Sbjct:  200 TALALDNMFSIEDLYRTALVAGALSVDAAAGSVKPFDARIHELRGHRGQIDAAAAYRDLLDGSP---INQSHRDCDKVQDP----YSLRCQPQVMGACLDQMRHAADVLLIEANAVSDNPLIFPDTGEVLSGGNFHAEPVAFAADNLALAAAEIGALAERRIALLI-DATLSGLPPFLVKDGGVN 376          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_BACCN (Histidine ammonia-lyase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=hutH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.082e-17
Identity = 57/170 (33.53%), Postives = 86/170 (50.59%), Query Frame = 1
Query:   34 EANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            EA  LA  SE+++++  E ++G  +  D   HK + +  QIE A  + +IL  S  V    +L          QD Y+LR  PQ  G   +V+ +  + +E E+N+  DNPLI     K + GGNF G PI  +MD  ++ +A I  +   +   LVN   N+ LP  LS
Sbjct:  209 EAETLAYQSELIASMTLEGLRGIIDAFDENVHKARGYKEQIEVAQRIRNILQDSKLVTKQGELRV--------QDAYSLRCIPQVHGASWQVLHYVKEKLEIEMNAATDNPLIFDGGEKVISGGNFHGQPIAFAMDFLKVGMAEIANISERRIERLVNPQLND-LPPFLS 369          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_YERE8 (Histidine ammonia-lyase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=hutH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 61/187 (32.62%), Postives = 94/187 (50.27%), Query Frame = 1
Query:    1 VGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            V +  A   LFEA +L   + +  ++  E   G     D   H ++   GQI+AA    H+L   S V+ + +    D +Q P    Y+LR  PQ +G  +  +R A + +  E N+V+DNPL+   +   L GGNF   P+ ++ DN  LA+A IG L   + S L+ D + + LP  L  +GG N
Sbjct:  197 VSTAYALRGLFEAEDLYAAASVFGSLTVEAALGSRSPFDARIHAVRGQRGQIDAARTYRHLLGERSEVSESHR--NCDKVQDP----YSLRCQPQVMGACLTQMRQAAEVLAIESNAVSDNPLVFADQGDVLSGGNFHAEPVAMAADNLALALAEIGSLAERRIS-LLMDKHMSQLPPFLVENGGVN 376          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_OCHA4 (Histidine ammonia-lyase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=hutH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 58/179 (32.40%), Postives = 95/179 (53.07%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            + LA   LF A+  A  + I  A+  +   G         H L+ H GQI+A   +  +L+GS    V ++ H ++  Q+  QD Y +R  PQ  G  ++++R A +++E E N+V DNPLI +S  +A+ GGNF   P+  + D   LA+  IG +   + + LV+   + GLP+ L+
Sbjct:  201 TALALAGLFRAHRAAQTALITGALSTDAAMGSDAPFHEEIHTLRGHKGQIDAGRALRALLEGS----VIRQSH-LEGDQRV-QDPYCIRCQPQVDGACLDILRQAARTLEIEANAVTDNPLI-LSDGRAVSGGNFHAEPVAFAADQIALAVCEIGAISQRRIALLVDPALSFGLPAFLA 372          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_CITK8 (Histidine ammonia-lyase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=hutH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 59/178 (33.15%), Postives = 91/178 (51.12%), Query Frame = 1
Query:   28 LFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL--SGGRN 555
            LFEA  L   + +  A+  E + G     D   H  +   GQI+AA +  H+L  +S +  A+  H  + +Q P    Y+LR  PQ +G  +  +R A + +  E N+V+DNPL+       + GGNF   P+ ++ DN  LAIA IG L   + + L+ D + + LP  L  +GG N
Sbjct:  209 LFEAQALFASAVVCGALTTEAVLGSRRPFDARIHAARGQRGQIDAAGLFRHVLTETSAI--AQSHHNCEKVQDP----YSLRCQPQVMGACLTQLRQAMEVLLVEANAVSDNPLVFAEEGDVISGGNFHAEPVAMAADNLALAIAEIGALSERRIA-LMMDKHMSQLPPFLVKNGGVN 379          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_BRUO2 (Histidine ammonia-lyase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=hutH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 56/179 (31.28%), Postives = 94/179 (52.51%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            + LA   LF A+  A  + I  A+  +   G         H+L+ H GQI+A   +  +L+GS+   + +   E D   +  QD Y +R  PQ  G  ++++R A +++E E N+V DNPL+ +S  +A+ GGNF   P+  + D   LA+  IG +   + + LV+   + GLP+ L+
Sbjct:  201 TALALAGLFRAHRAARTALITGALSTDAAMGSDAPFHEEIHQLRGHKGQIDAGRALRTLLEGSA---IRRSHLEGD---QRVQDPYCIRCQPQVDGACLDILRQAARTLEIEANAVTDNPLV-LSDGRAVSGGNFHAEPVAFAADQIALAVCEIGAISQRRIALLVDPSLSFGLPAFLA 372          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_BRUAB (Histidine ammonia-lyase OS=Brucella abortus GN=hutH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 56/179 (31.28%), Postives = 94/179 (52.51%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            + LA   LF A+  A  + I  A+  +   G         H+L+ H GQI+A   +  +L+GS+   + +   E D   +  QD Y +R  PQ  G  ++++R A +++E E N+V DNPL+ +S  +A+ GGNF   P+  + D   LA+  IG +   + + LV+   + GLP+ L+
Sbjct:  201 TALALAGLFRAHRAARTALITGALSTDAAMGSDAPFHEEIHQLRGHKGQIDAGRALRTLLEGSA---IRRSHLEGD---QRVQDPYCIRCQPQVDGACLDILRQAARTLEIEANAVTDNPLV-LSDGRAVSGGNFHAEPVAFAADQIALAVCEIGAISQRRIALLVDPSLSFGLPAFLA 372          
BLAST of CF510256 vs. ExPASy Swiss-Prot
Match: HUTH_BRUA2 (Histidine ammonia-lyase OS=Brucella abortus (strain 2308) GN=hutH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 56/179 (31.28%), Postives = 94/179 (52.51%), Query Frame = 1
Query:    7 SGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS 543
            + LA   LF A+  A  + I  A+  +   G         H+L+ H GQI+A   +  +L+GS+   + +   E D   +  QD Y +R  PQ  G  ++++R A +++E E N+V DNPL+ +S  +A+ GGNF   P+  + D   LA+  IG +   + + LV+   + GLP+ L+
Sbjct:  201 TALALAGLFRAHRAARTALITGALSTDAAMGSDAPFHEEIHQLRGHKGQIDAGRALRTLLEGSA---IRRSHLEGD---QRVQDPYCIRCQPQVDGACLDILRQAARTLEIEANAVTDNPLV-LSDGRAVSGGNFHAEPVAFAADQIALAVCEIGAISQRRIALLVDPSLSFGLPAFLA 372          
The following BLAST results are available for this feature:
BLAST of CF510256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
HUTH_PSYIN9.082e-1732.76Histidine ammonia-lyase OS=Psychromonas ingrahamii... [more]
HUTH_GEOTN9.082e-1729.61Histidine ammonia-lyase OS=Geobacillus thermodenit... [more]
HUTH_BURCM9.082e-1733.51Histidine ammonia-lyase OS=Burkholderia ambifaria ... [more]
HUTH_BACCN9.082e-1733.53Histidine ammonia-lyase OS=Bacillus cereus subsp. ... [more]
HUTH_YERE81.186e-1632.62Histidine ammonia-lyase OS=Yersinia enterocolitica... [more]
HUTH_OCHA41.186e-1632.40Histidine ammonia-lyase OS=Ochrobactrum anthropi (... [more]
HUTH_CITK81.186e-1633.15Histidine ammonia-lyase OS=Citrobacter koseri (str... [more]
HUTH_BRUO21.186e-1631.28Histidine ammonia-lyase OS=Brucella ovis (strain A... [more]
HUTH_BRUAB1.186e-1631.28Histidine ammonia-lyase OS=Brucella abortus GN=hut... [more]
HUTH_BRUA21.186e-1631.28Histidine ammonia-lyase OS=Brucella abortus (strai... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_124000-749 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-76_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510256 ID=CF510256; Name=CF510256; organism=Citrus sinensis; type=EST; length=570bp
GTTGGTTCTGGCCTGGCTTCTATGGTTCTGTTTGAGGCTAACAACCTTGC
TCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTGAAGTCATGCAAGGCA
AACCTGAGTTCACCGATCACTTGACACACAAATTGAAGCACCATCCTGGC
CAAATTGAGGCTGCTGCTATAATGGAACATATCCTCGATGGCAGCTCTTA
TGTTAACGTGGCTAAGAAGTTGCATGAGATTGATCCTCTGCAGAAGCCGA
AACAGGATCGTTATGCCCTGAGAACTTCACCACAATGGCTCGGCCCTCAG
ATCGAAGTGATTCGGTTTGCAACCAAGTCTATTGAACGGGAGATCAACTC
GGTGAATGACAATCCCCTGATCGACGTTTCAAGGAACAAGGCCTTACATG
GTGGCAATTTTCAGGGGACCCCAATTGGTGTCTCAATGGACAATACCCGT
TTGGCTATTGCGGCAATAGGGAAGCTCATGTTTGCCCAATTTTCTGAACT
TGTCAACGATTTTTACAACAATGGATTGCCGTCAAATCTGTCTGGTGGCA
GGAATCCTACCTGGATTATG
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