CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHESW (ATP synthase gamma chain OS=Shewanella sp. (strain W3-18-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA EL  +L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  206 IYEPDPKVLLDTLLVRYIESQVYQGVVENIASEQAARMVAMKAATDNAGELINDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHESH (ATP synthase gamma chain OS=Shewanella sediminis (strain HAW-EB3) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP ++L+ ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA +L  +L + YN+ RQ  IT EL EIVAGA A+
Sbjct:  206 LYEPDPKELLETLLVRYVESQVYQGVVENLASEQAARMVAMKSATDNAGDLISDLQLVYNKARQAAITQELSEIVAGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHEPC (ATP synthase gamma chain OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA EL  +L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  206 IYEPDPKVLLDTLLVRYIESQVYQGVVENIASEQAARMVAMKAATDNAGELINDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHELP (ATP synthase gamma chain OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP ++L+ ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA EL  +L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  206 LYEPDPKELLETLLVRYVESQVYQGVVENIASEQAARMVAMKAATDNAGELIDDLQLVYNKARQAAITQELSEIVSGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHEB9 (ATP synthase gamma chain OS=Shewanella baltica (strain OS195) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA EL  +L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  206 IYEPDPKALLDTLLVRYVESQVYQGVVENIASEQAARMVAMKSATDNAGELINDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHEB8 (ATP synthase gamma chain OS=Shewanella baltica (strain OS185) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA EL  +L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  206 IYEPDPKALLDTLLVRYVESQVYQGVVENIASEQAARMVAMKSATDNAGELINDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHEB5 (ATP synthase gamma chain OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA EL  +L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  206 IYEPDPKALLDTLLVRYVESQVYQGVVENIASEQAARMVAMKSATDNAGELINDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHEB2 (ATP synthase gamma chain OS=Shewanella baltica (strain OS223) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA EL  +L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  206 IYEPDPKALLDTLLVRYVESQVYQGVVENIASEQAARMVAMKSATDNAGELINDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHEAM (ATP synthase gamma chain OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++EQDP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA  L  +L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  206 IYEQDPKDLLDTLLVRYVESQVYQGVVENIASEQAARMVAMKAATDNAGTLIDDLQLVYNKARQAAITQELSEIVSGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROMO (ATP synthase gamma chain, sodium ion specific OS=Propionigenium modestum GN=atpG PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 37/81 (45.68%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            +FE     IL +++P Y+N Q+ +A  E+ ASE +AR + M   TDNA+++ K+L++ YN+ERQ  IT E+ EIV+GA AL
Sbjct:  202 IFEPSVEDILSSLLPKYLNIQLYQAILENTASEHSARKNAMKNATDNAEDMIKDLTLQYNRERQAAITQEISEIVSGASAL 282          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_SHESW4.606e-1346.91ATP synthase gamma chain OS=Shewanella sp. (strain... [more]
ATPG_SHESH4.606e-1346.91ATP synthase gamma chain OS=Shewanella sediminis (... [more]
ATPG_SHEPC4.606e-1346.91ATP synthase gamma chain OS=Shewanella putrefacien... [more]
ATPG_SHELP4.606e-1346.91ATP synthase gamma chain OS=Shewanella loihica (st... [more]
ATPG_SHEB94.606e-1346.91ATP synthase gamma chain OS=Shewanella baltica (st... [more]
ATPG_SHEB84.606e-1346.91ATP synthase gamma chain OS=Shewanella baltica (st... [more]
ATPG_SHEB54.606e-1346.91ATP synthase gamma chain OS=Shewanella baltica (st... [more]
ATPG_SHEB24.606e-1346.91ATP synthase gamma chain OS=Shewanella baltica (st... [more]
ATPG_SHEAM4.606e-1346.91ATP synthase gamma chain OS=Shewanella amazonensis... [more]
ATPG_PROMO4.606e-1345.68ATP synthase gamma chain, sodium ion specific OS=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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