CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROMH (ATP synthase gamma chain OS=Proteus mirabilis (strain HI4320) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ ++  E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKTLLDTLLRRYIESQVYQSVVENLASEQAARMVAMKAATDNGGNLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROAC (ATP synthase gamma chain OS=Propionibacterium acnes GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = -1
Query:  228 EGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 542
            EG++      V  N  E+     FE +P  +LD ++PLY+ +++  A  +S ASE+A+R   M   TDNA++L + L+   NQ RQ  IT E+ EIV GA AL +
Sbjct:  205 EGQLAEGDPGVGANAEEIFHEYRFEPNPVSVLDELLPLYVANRVHYALLQSAASELASRQRAMKAATDNAEQLIQTLTRQANQARQAAITQEITEIVGGAAALAE 309          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PECCP (ATP synthase gamma chain OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV GA A+
Sbjct:  207 LYEPDPKSLLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MYCPA (ATP synthase gamma chain OS=Mycobacterium paratuberculosis GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  234 ELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 494
            E+  L  FE D   + ++++P Y+ +++  A  ES ASE+A+R   M   TDNAD+L K L++  N+ERQ +IT E+ EIV GA AL
Sbjct:  214 EVRTLYSFEPDATTLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANAL 300          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MYCA1 (ATP synthase gamma chain OS=Mycobacterium avium (strain 104) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  234 ELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 494
            E+  L  FE D   + ++++P Y+ +++  A  ES ASE+A+R   M   TDNAD+L K L++  N+ERQ +IT E+ EIV GA AL
Sbjct:  214 EVRTLYSFEPDATTLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANAL 300          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_HAEIN (ATP synthase gamma chain OS=Haemophilus influenzae GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E +P  +LD+++  Y+ SQI +A  ++ ASE AARM  M   TDNA  L  +L + YN+ RQ  IT EL EIVAGA A+
Sbjct:  209 LYEPEPKVLLDSLLVRYLESQIYQAVVDNVASEQAARMVAMKAATDNAGNLINDLRLVYNKARQASITNELNEIVAGAAAI 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_GEOKA (ATP synthase gamma chain OS=Geobacillus kaustophilus GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            FE    +ILD ++P Y  S I  A  ++ ASE AARM+ M   TDNA+EL + L+++YN+ RQ  IT E+ EIVAGA AL
Sbjct:  205 FEPSQEEILDVLLPQYAESLIYGALLDAKASEHAARMTAMKNATDNANELIRTLTLSYNRARQAAITQEITEIVAGANAL 284          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_FLAPJ (ATP synthase gamma chain OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            +FE    +I+  ++P  + +Q+ +  ++SFASE  ARM+ M   TDNA EL+  L + YN+ RQ  IT E+LEIV GAEAL
Sbjct:  204 IFEPSKEEIVLTLIPKSLKTQLYKGIRDSFASEHGARMTAMHKATDNATELRDQLKLTYNKARQAAITNEILEIVGGAEAL 284          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ERWT9 (ATP synthase gamma chain OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  209 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGNLIKELQLVYNKARQASITQELTEIVSGASAV 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ERWCT (ATP synthase gamma chain OS=Erwinia carotovora subsp. atroseptica GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV GA A+
Sbjct:  207 LYEPDPKSLLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_PROMH4.606e-1346.91ATP synthase gamma chain OS=Proteus mirabilis (str... [more]
ATPG_PROAC4.606e-1339.05ATP synthase gamma chain OS=Propionibacterium acne... [more]
ATPG_PECCP4.606e-1346.91ATP synthase gamma chain OS=Pectobacterium carotov... [more]
ATPG_MYCPA4.606e-1343.68ATP synthase gamma chain OS=Mycobacterium paratube... [more]
ATPG_MYCA14.606e-1343.68ATP synthase gamma chain OS=Mycobacterium avium (s... [more]
ATPG_HAEIN4.606e-1348.15ATP synthase gamma chain OS=Haemophilus influenzae... [more]
ATPG_GEOKA4.606e-1350.00ATP synthase gamma chain OS=Geobacillus kaustophil... [more]
ATPG_FLAPJ4.606e-1345.68ATP synthase gamma chain OS=Flavobacterium psychro... [more]
ATPG_ERWT94.606e-1346.91ATP synthase gamma chain OS=Erwinia tasmaniensis (... [more]
ATPG_ERWCT4.606e-1346.91ATP synthase gamma chain OS=Erwinia carotovora sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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