CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BACP3 (ATP synthase gamma chain OS=Bacillus PS3 GN=atpG PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            FE    +ILD ++P Y  S I  A  ++ ASE AARM+ M   TDNA+EL + L+++YN+ RQ  IT E+ EIVAGA AL
Sbjct:  206 FEPSQEEILDVLLPQYAESLIYGALLDAKASEHAARMTAMKNATDNANELIRTLTLSYNRARQAAITQEITEIVAGANAL 285          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_YERPY (ATP synthase gamma chain OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_YERPS (ATP synthase gamma chain OS=Yersinia pseudotuberculosis GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_YERPP (ATP synthase gamma chain OS=Yersinia pestis (strain Pestoides F) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_YERPN (ATP synthase gamma chain OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_YERPG (ATP synthase gamma chain OS=Yersinia pestis bv. Antiqua (strain Angola) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_YERPE (ATP synthase gamma chain OS=Yersinia pestis GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_YERPB (ATP synthase gamma chain OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_YERPA (ATP synthase gamma chain OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_YERP3 (ATP synthase gamma chain OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_BACP34.606e-1350.00ATP synthase gamma chain OS=Bacillus PS3 GN=atpG P... [more]
ATPG_YERPY6.016e-1346.91ATP synthase gamma chain OS=Yersinia pseudotubercu... [more]
ATPG_YERPS6.016e-1346.91ATP synthase gamma chain OS=Yersinia pseudotubercu... [more]
ATPG_YERPP6.016e-1346.91ATP synthase gamma chain OS=Yersinia pestis (strai... [more]
ATPG_YERPN6.016e-1346.91ATP synthase gamma chain OS=Yersinia pestis bv. An... [more]
ATPG_YERPG6.016e-1346.91ATP synthase gamma chain OS=Yersinia pestis bv. An... [more]
ATPG_YERPE6.016e-1346.91ATP synthase gamma chain OS=Yersinia pestis GN=atp... [more]
ATPG_YERPB6.016e-1346.91ATP synthase gamma chain OS=Yersinia pseudotubercu... [more]
ATPG_YERPA6.016e-1346.91ATP synthase gamma chain OS=Yersinia pestis bv. An... [more]
ATPG_YERP36.016e-1346.91ATP synthase gamma chain OS=Yersinia pseudotubercu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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