CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_YERE8 (ATP synthase gamma chain OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVGGASAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHISS (ATP synthase gamma chain OS=Shigella sonnei (strain Ss046) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHIFL (ATP synthase gamma chain OS=Shigella flexneri GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHIF8 (ATP synthase gamma chain OS=Shigella flexneri serotype 5b (strain 8401) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHIDS (ATP synthase gamma chain OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHIBS (ATP synthase gamma chain OS=Shigella boydii serotype 4 (strain Sb227) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHIB3 (ATP synthase gamma chain OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SERP5 (ATP synthase gamma chain OS=Serratia proteamaculans (strain 568) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKVLLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGASAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SALTY (ATP synthase gamma chain OS=Salmonella typhimurium GN=atpG PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SALTI (ATP synthase gamma chain OS=Salmonella typhi GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_YERE86.016e-1346.91ATP synthase gamma chain OS=Yersinia enterocolitic... [more]
ATPG_SHISS6.016e-1346.91ATP synthase gamma chain OS=Shigella sonnei (strai... [more]
ATPG_SHIFL6.016e-1346.91ATP synthase gamma chain OS=Shigella flexneri GN=a... [more]
ATPG_SHIF86.016e-1346.91ATP synthase gamma chain OS=Shigella flexneri sero... [more]
ATPG_SHIDS6.016e-1346.91ATP synthase gamma chain OS=Shigella dysenteriae s... [more]
ATPG_SHIBS6.016e-1346.91ATP synthase gamma chain OS=Shigella boydii seroty... [more]
ATPG_SHIB36.016e-1346.91ATP synthase gamma chain OS=Shigella boydii seroty... [more]
ATPG_SERP56.016e-1346.91ATP synthase gamma chain OS=Serratia proteamaculan... [more]
ATPG_SALTY6.016e-1346.91ATP synthase gamma chain OS=Salmonella typhimurium... [more]
ATPG_SALTI6.016e-1346.91ATP synthase gamma chain OS=Salmonella typhi GN=at... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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