CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SALCH (ATP synthase gamma chain OS=Salmonella choleraesuis GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SALAR (ATP synthase gamma chain OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SALA4 (ATP synthase gamma chain OS=Salmonella agona (strain SL483) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PHOLL (ATP synthase gamma chain OS=Photorhabdus luminescens subsp. laumondii GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDILLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGASAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MYXXD (ATP synthase gamma chain OS=Myxococcus xanthus (strain DK 1622) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E D   +LD ++P  +N ++ RA  ES ASE  ARMS M   T NA ++  NL++ YN+ RQ  IT EL+EIV+GAEAL
Sbjct:  214 YEPDRQSVLDRLVPQAVNIKLYRALLESVASEHGARMSAMENATSNATDMIGNLTLTYNRTRQAVITKELMEIVSGAEAL 293          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MYCTU (ATP synthase gamma chain OS=Mycobacterium tuberculosis GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = -1
Query:  228 LMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 482
            L  FE D   + ++++P Y+ +++  A  ES ASE+A+R   M   TDNAD+L K L++  N+ERQ +IT E+ EIV GA AL +
Sbjct:  219 LYSFEPDATMLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANALAE 303          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MYCTA (ATP synthase gamma chain OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = -1
Query:  228 LMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 482
            L  FE D   + ++++P Y+ +++  A  ES ASE+A+R   M   TDNAD+L K L++  N+ERQ +IT E+ EIV GA AL +
Sbjct:  219 LYSFEPDATMLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANALAE 303          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MYCBT (ATP synthase gamma chain OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = -1
Query:  228 LMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 482
            L  FE D   + ++++P Y+ +++  A  ES ASE+A+R   M   TDNAD+L K L++  N+ERQ +IT E+ EIV GA AL +
Sbjct:  219 LYSFEPDATMLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANALAE 303          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MYCBP (ATP synthase gamma chain OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = -1
Query:  228 LMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 482
            L  FE D   + ++++P Y+ +++  A  ES ASE+A+R   M   TDNAD+L K L++  N+ERQ +IT E+ EIV GA AL +
Sbjct:  219 LYSFEPDATMLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANALAE 303          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MYCBO (ATP synthase gamma chain OS=Mycobacterium bovis GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = -1
Query:  228 LMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 482
            L  FE D   + ++++P Y+ +++  A  ES ASE+A+R   M   TDNAD+L K L++  N+ERQ +IT E+ EIV GA AL +
Sbjct:  219 LYSFEPDATMLFESLLPRYLTTRVYAALLESAASELASRQRAMKSATDNADDLIKALTLMANRERQAQITQEISEIVGGANALAE 303          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_SALCH6.016e-1346.91ATP synthase gamma chain OS=Salmonella choleraesui... [more]
ATPG_SALAR6.016e-1346.91ATP synthase gamma chain OS=Salmonella arizonae (s... [more]
ATPG_SALA46.016e-1346.91ATP synthase gamma chain OS=Salmonella agona (stra... [more]
ATPG_PHOLL6.016e-1346.91ATP synthase gamma chain OS=Photorhabdus luminesce... [more]
ATPG_MYXXD6.016e-1348.75ATP synthase gamma chain OS=Myxococcus xanthus (st... [more]
ATPG_MYCTU6.016e-1343.53ATP synthase gamma chain OS=Mycobacterium tubercul... [more]
ATPG_MYCTA6.016e-1343.53ATP synthase gamma chain OS=Mycobacterium tubercul... [more]
ATPG_MYCBT6.016e-1343.53ATP synthase gamma chain OS=Mycobacterium bovis (s... [more]
ATPG_MYCBP6.016e-1343.53ATP synthase gamma chain OS=Mycobacterium bovis (s... [more]
ATPG_MYCBO6.016e-1343.53ATP synthase gamma chain OS=Mycobacterium bovis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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