CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ECOSM (ATP synthase gamma chain OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ECOSE (ATP synthase gamma chain OS=Escherichia coli (strain SE11) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ECOLU (ATP synthase gamma chain OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ECOLI (ATP synthase gamma chain OS=Escherichia coli (strain K12) GN=atpG PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ECOLC (ATP synthase gamma chain OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ECOL6 (ATP synthase gamma chain OS=Escherichia coli O6 GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ECOL5 (ATP synthase gamma chain OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ECOK1 (ATP synthase gamma chain OS=Escherichia coli O1:K1 / APEC GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ECOHS (ATP synthase gamma chain OS=Escherichia coli O9:H4 (strain HS) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ECODH (ATP synthase gamma chain OS=Escherichia coli (strain K12 / DH10B) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP  +LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDN   L K L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_ECOSM6.016e-1346.91ATP synthase gamma chain OS=Escherichia coli (stra... [more]
ATPG_ECOSE6.016e-1346.91ATP synthase gamma chain OS=Escherichia coli (stra... [more]
ATPG_ECOLU6.016e-1346.91ATP synthase gamma chain OS=Escherichia coli O17:K... [more]
ATPG_ECOLI6.016e-1346.91ATP synthase gamma chain OS=Escherichia coli (stra... [more]
ATPG_ECOLC6.016e-1346.91ATP synthase gamma chain OS=Escherichia coli (stra... [more]
ATPG_ECOL66.016e-1346.91ATP synthase gamma chain OS=Escherichia coli O6 GN... [more]
ATPG_ECOL56.016e-1346.91ATP synthase gamma chain OS=Escherichia coli O6:K1... [more]
ATPG_ECOK16.016e-1346.91ATP synthase gamma chain OS=Escherichia coli O1:K1... [more]
ATPG_ECOHS6.016e-1346.91ATP synthase gamma chain OS=Escherichia coli O9:H4... [more]
ATPG_ECODH6.016e-1346.91ATP synthase gamma chain OS=Escherichia coli (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
back to top