CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_STRCO (ATP synthase gamma chain OS=Streptomyces coelicolor GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 41/89 (46.07%), Postives = 51/89 (57.30%), Query Frame = -1
Query:  234 KGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 500
            K E+ PL  FE     +LDA++P Y+ S+I  A  +S AS+ AA    M   TDNA EL   LS   N  RQ +IT E+ EIV GA AL
Sbjct:  208 KDEILPLYDFEPSAEDVLDALLPRYVESRIYNALLQSAASKHAATRRAMKSATDNAGELINTLSRLANAARQAEITQEISEIVGGASAL 296          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_RHIME (ATP synthase gamma chain OS=Rhizobium meliloti GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = -1
Query:  234 SPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 488
            S +  +E +   IL  ++P  ++ QI RA  E+ A E+ A+MS M   T NA E+   L+++YN++RQ +IT EL+EI++GAEAL
Sbjct:  210 SAIYEYEPEAGAILSDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMIDKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSEU2 (ATP synthase gamma chain OS=Pseudomonas syringae pv. syringae (strain B728a) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D  ++LD +M  Y+ SQ+ +A  E+ A+E AARM  M   TDNA +L  +L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  206 LYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSESM (ATP synthase gamma chain OS=Pseudomonas syringae pv. tomato GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D  ++LD +M  Y+ SQ+ +A  E+ A+E AARM  M   TDNA +L  +L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  206 LYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSEPF (ATP synthase gamma chain OS=Pseudomonas fluorescens (strain Pf0-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D  ++LD +M  Y+ SQ+ +A  E+ A+E AARM  M   TDNA +L  +L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  206 LYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSEFS (ATP synthase gamma chain OS=Pseudomonas fluorescens (strain SBW25) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D  ++LD +M  Y+ SQ+ +A  E+ A+E AARM  M   TDNA +L  +L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  206 LYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSEF5 (ATP synthase gamma chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D  ++LD +M  Y+ SQ+ +A  E+ A+E AARM  M   TDNA +L  +L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  206 LYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSE14 (ATP synthase gamma chain OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D  ++LD +M  Y+ SQ+ +A  E+ A+E AARM  M   TDNA +L  +L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  206 LYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_NOVAD (ATP synthase gamma chain OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = -1
Query:  234 NKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 503
            N   +  ++ +E    +IL+ ++P Y+ +QI  A  E  ASE  A M+ M   T NA EL   L++ YN+ RQ  IT EL+EI+AGAEAL
Sbjct:  201 NTVAIDAVVEYEPGEEEILEELLPRYVTTQIFGALLEREASEQGASMTAMDNATRNAGELINKLTIQYNRSRQAAITTELIEIIAGAEAL 290          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_HERA2 (ATP synthase gamma chain OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = -1
Query:  228 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 473
            +E     +LD ++P ++  Q+ +A  ES ASE +ARM  M    DNA EL ++L++ YN+ RQ  IT E+ EI AGA AL Q
Sbjct:  214 YEPSQEDVLDQLLPRFIEVQLYQAILESIASEHSARMMAMRNANDNAKELVRDLTLTYNKARQAAITTEISEIAAGATALNQ 295          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_STRCO8.686e-1246.07ATP synthase gamma chain OS=Streptomyces coelicolo... [more]
ATPG_RHIME8.686e-1242.35ATP synthase gamma chain OS=Rhizobium meliloti GN=... [more]
ATPG_PSEU28.686e-1245.68ATP synthase gamma chain OS=Pseudomonas syringae p... [more]
ATPG_PSESM8.686e-1245.68ATP synthase gamma chain OS=Pseudomonas syringae p... [more]
ATPG_PSEPF8.686e-1245.68ATP synthase gamma chain OS=Pseudomonas fluorescen... [more]
ATPG_PSEFS8.686e-1245.68ATP synthase gamma chain OS=Pseudomonas fluorescen... [more]
ATPG_PSEF58.686e-1245.68ATP synthase gamma chain OS=Pseudomonas fluorescen... [more]
ATPG_PSE148.686e-1245.68ATP synthase gamma chain OS=Pseudomonas syringae p... [more]
ATPG_NOVAD8.686e-1242.22ATP synthase gamma chain OS=Novosphingobium aromat... [more]
ATPG_HERA28.686e-1243.90ATP synthase gamma chain OS=Herpetosiphon aurantia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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