CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_GEOSF (ATP synthase gamma chain OS=Geobacter sp. (strain FRC-32) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 33/87 (37.93%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  234 ELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 494
            E +P  ++E   +++L  ++P ++  QI ++  ES ASE  ARM+ M   + NA+E+   L++ YN+ RQ  IT EL+EI++GAE++
Sbjct:  199 EYAPEYIYEPSKSELLGELLPKHIEVQIFKSLLESVASEHGARMTAMDSASKNANEMIGKLTLQYNRARQAAITTELMEIISGAESI 285          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_FRASN (ATP synthase gamma chain OS=Frankia sp. (strain EAN1pec) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            FE     +LDA++P Y+ S++  A  ES ASE AAR   M   TDNA++L K  + A N+ RQ  IT E+ EIV GA AL
Sbjct:  215 FEPSAEAVLDALLPRYVESRLYAALLESAASESAARQRAMKSATDNAEDLIKTYTRAANRARQDAITQEISEIVGGANAL 294          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BUCDN (ATP synthase gamma chain OS=Buchnera aphidicola subsp. Diuraphis noxia GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = -1
Query:  231 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALT 476
            L+E +   I+D++   Y+ SQ+ ++  E+ ASE AARM  M   T+N+ E  K L + YN+ RQ  IT EL EI+AGA A++
Sbjct:  207 LYESESKLIIDSLFKRYIESQVYQSILENIASEHAARMMAMKTATENSTERIKELKLLYNKVRQATITQELTEIIAGASAVS 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BACME (ATP synthase gamma chain OS=Bacillus megaterium GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            FE    +IL+ ++P Y  S I     +  ASE AARM+ M   TDNA +L  NL+++YN+ RQ  IT E+ EIV GA AL
Sbjct:  205 FEPSQEEILEVLLPQYAESLIYGGLLDGKASEHAARMTAMKSATDNAKDLINNLTLSYNRARQAAITQEITEIVGGAAAL 284          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BACHD (ATP synthase gamma chain OS=Bacillus halodurans GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E +   IL+A++P Y  S +  A  ++ ASE AARM+ MS  TDNA  L   L+++YN+ RQ  IT E+ EIV GA AL
Sbjct:  205 YEPNEQVILEALLPQYAESLVYGALLDAKASEFAARMTAMSAATDNATNLIDELTLSYNRARQAAITQEITEIVGGAAAL 284          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG1_PHOPR (ATP synthase gamma chain 1 OS=Photobacterium profundum GN=atpG1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +P  +LD ++  Y+ SQ+ +   E+ A E AARM  M   TDNA ++  +L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  208 IYEPEPKPLLDTLLVRYVESQVYQGVVENLACEQAARMVAMKSATDNAGDIINDLQLVYNKARQAAITQELSEIVSGASAV 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_XYLFT (ATP synthase gamma chain OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = -1
Query:  234 MIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 533
            ++ A+D V  +  +     L+E D A +L+ +M  Y+ S + +A  E+ ASE AARM  M   +DNA++L   L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  192 LLAAKDKVAHHDWDY----LYEPDAATVLEHVMTRYIESLVYQAMLENIASEHAARMVAMKAASDNANKLIGTLQLVYNKARQAAITQEISEIVGGAAAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_XYLFM (ATP synthase gamma chain OS=Xylella fastidiosa (strain M12) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = -1
Query:  234 MIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 533
            ++ A+D V  +  +     L+E D A +L+ +M  Y+ S + +A  E+ ASE AARM  M   +DNA++L   L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  192 LLAAKDKVAHHDWDY----LYEPDAATVLEHVMTRYIESLVYQAMLENIASEHAARMVAMKAASDNANKLIGTLQLVYNKARQAAITQEISEIVGGAAAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_XYLF2 (ATP synthase gamma chain OS=Xylella fastidiosa (strain M23) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = -1
Query:  234 MIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 533
            ++ A+D V  +  +     L+E D A +L+ +M  Y+ S + +A  E+ ASE AARM  M   +DNA++L   L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  192 LLAAKDKVAHHDWDY----LYEPDAATVLEHVMTRYIESLVYQAMLENIASEHAARMVAMKAASDNANKLIGTLQLVYNKARQAAITQEISEIVGGAAAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSEAE (ATP synthase gamma chain OS=Pseudomonas aeruginosa GN=atpG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D   +LD ++  Y+ SQ+ +A  E+ A E AARM  M   TDNA EL  +L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  206 LYEPDAKSLLDGLLVRYVESQVYQAVVENNACEQAARMIAMKNATDNAGELISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_GEOSF1.935e-1137.93ATP synthase gamma chain OS=Geobacter sp. (strain ... [more]
ATPG_FRASN1.935e-1147.50ATP synthase gamma chain OS=Frankia sp. (strain EA... [more]
ATPG_BUCDN1.935e-1142.68ATP synthase gamma chain OS=Buchnera aphidicola su... [more]
ATPG_BACME1.935e-1146.25ATP synthase gamma chain OS=Bacillus megaterium GN... [more]
ATPG_BACHD1.935e-1146.25ATP synthase gamma chain OS=Bacillus halodurans GN... [more]
ATPG1_PHOPR1.935e-1141.98ATP synthase gamma chain 1 OS=Photobacterium profu... [more]
ATPG_XYLFT2.527e-1139.00ATP synthase gamma chain OS=Xylella fastidiosa (st... [more]
ATPG_XYLFM2.527e-1139.00ATP synthase gamma chain OS=Xylella fastidiosa (st... [more]
ATPG_XYLF22.527e-1139.00ATP synthase gamma chain OS=Xylella fastidiosa (st... [more]
ATPG_PSEAE2.527e-1145.68ATP synthase gamma chain OS=Pseudomonas aeruginosa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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